miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9001 5' -59.8 NC_002512.2 + 226892 0.68 0.753988
Target:  5'- gGCCcgGGACCgggCcACGcGGGAGGCCa- -3'
miRNA:   3'- aUGGa-CCUGGa--GcUGC-CCCUCUGGag -5'
9001 5' -59.8 NC_002512.2 + 226191 0.67 0.797442
Target:  5'- gACCgggucGACCUCcgucgggGACGGGaGGACCUCc -3'
miRNA:   3'- aUGGac---CUGGAG-------CUGCCCcUCUGGAG- -5'
9001 5' -59.8 NC_002512.2 + 225821 0.74 0.417505
Target:  5'- gGCCUgGGACCUCGAgcCGcGGGGGAUCg- -3'
miRNA:   3'- aUGGA-CCUGGAGCU--GC-CCCUCUGGag -5'
9001 5' -59.8 NC_002512.2 + 225219 0.75 0.332248
Target:  5'- -uCCUGGGCUUCGACGcgccGGcGGGGCCUCc -3'
miRNA:   3'- auGGACCUGGAGCUGC----CC-CUCUGGAG- -5'
9001 5' -59.8 NC_002512.2 + 224029 0.67 0.772059
Target:  5'- cGCCcgGGACUcCGACGGGGccGCCg- -3'
miRNA:   3'- aUGGa-CCUGGaGCUGCCCCucUGGag -5'
9001 5' -59.8 NC_002512.2 + 223193 0.66 0.84691
Target:  5'- ----cGGGCCgccCGACGGGGAcGGCgUCc -3'
miRNA:   3'- auggaCCUGGa--GCUGCCCCU-CUGgAG- -5'
9001 5' -59.8 NC_002512.2 + 220318 0.66 0.838433
Target:  5'- gGCCggGGGCCgggCucCGGGGGGccggacgGCCUCg -3'
miRNA:   3'- aUGGa-CCUGGa--GcuGCCCCUC-------UGGAG- -5'
9001 5' -59.8 NC_002512.2 + 215132 0.67 0.806782
Target:  5'- gGCCgGGGuCCgcgCGACgGGGGAGGCgaCg -3'
miRNA:   3'- aUGGaCCU-GGa--GCUG-CCCCUCUGgaG- -5'
9001 5' -59.8 NC_002512.2 + 199586 0.7 0.590958
Target:  5'- gUACCgcgGGuCgUCGACGcGGGGGCCUCc -3'
miRNA:   3'- -AUGGa--CCuGgAGCUGCcCCUCUGGAG- -5'
9001 5' -59.8 NC_002512.2 + 195587 0.66 0.815122
Target:  5'- gACCgaggGGAacgccagucaCUCGGCGGGGcGGCCa- -3'
miRNA:   3'- aUGGa---CCUg---------GAGCUGCCCCuCUGGag -5'
9001 5' -59.8 NC_002512.2 + 192317 0.68 0.707246
Target:  5'- -uCCUGGAUCggUGACGGGGcGGcuCCUCu -3'
miRNA:   3'- auGGACCUGGa-GCUGCCCCuCU--GGAG- -5'
9001 5' -59.8 NC_002512.2 + 188379 0.66 0.854431
Target:  5'- uUGCCgcacgGGAga-UGGCGGGGAG-CCUCa -3'
miRNA:   3'- -AUGGa----CCUggaGCUGCCCCUCuGGAG- -5'
9001 5' -59.8 NC_002512.2 + 185964 0.66 0.831344
Target:  5'- cGCCUGGAgCUCGA-GGGcaacGGCCUg -3'
miRNA:   3'- aUGGACCUgGAGCUgCCCcu--CUGGAg -5'
9001 5' -59.8 NC_002512.2 + 185521 0.68 0.753988
Target:  5'- gGCCUGccgcuCUUCGAgGGGGuGGCCUa -3'
miRNA:   3'- aUGGACcu---GGAGCUgCCCCuCUGGAg -5'
9001 5' -59.8 NC_002512.2 + 185065 0.72 0.513892
Target:  5'- gACCcGGGCCUCGACcGGGAGcucggccGCUUCu -3'
miRNA:   3'- aUGGaCCUGGAGCUGcCCCUC-------UGGAG- -5'
9001 5' -59.8 NC_002512.2 + 184794 0.81 0.151338
Target:  5'- gGCCcGGGCCUCcGCGGGGAGACCc- -3'
miRNA:   3'- aUGGaCCUGGAGcUGCCCCUCUGGag -5'
9001 5' -59.8 NC_002512.2 + 183696 1.06 0.003083
Target:  5'- cUACCUGGACCUCGACGGGGAGACCUCc -3'
miRNA:   3'- -AUGGACCUGGAGCUGCCCCUCUGGAG- -5'
9001 5' -59.8 NC_002512.2 + 183499 0.7 0.610375
Target:  5'- cGCCUacGGCCgCGAgGGGGAGGCCg- -3'
miRNA:   3'- aUGGAc-CUGGaGCUgCCCCUCUGGag -5'
9001 5' -59.8 NC_002512.2 + 174419 0.66 0.831344
Target:  5'- cGCCgGGGCCUcCGuCGGGGcuACCa- -3'
miRNA:   3'- aUGGaCCUGGA-GCuGCCCCucUGGag -5'
9001 5' -59.8 NC_002512.2 + 164439 0.69 0.667796
Target:  5'- cGCCgGGAagccgcucggcgcCCUCGGCGGGGGcgacGACCg- -3'
miRNA:   3'- aUGGaCCU-------------GGAGCUGCCCCU----CUGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.