Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9003 | 3' | -58.8 | NC_002512.2 | + | 149866 | 0.66 | 0.842307 |
Target: 5'- aAGCAGCGacGCCUCguccggcuccgGCUGCcgcugCCuGGAc -3' miRNA: 3'- gUCGUCGC--UGGAGa----------CGACGa----GGuCCU- -5' |
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9003 | 3' | -58.8 | NC_002512.2 | + | 111622 | 0.66 | 0.834361 |
Target: 5'- gCGGcCAGCGAggcgCUGUagacguggUGCUCCAGGAc -3' miRNA: 3'- -GUC-GUCGCUgga-GACG--------ACGAGGUCCU- -5' |
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9003 | 3' | -58.8 | NC_002512.2 | + | 214130 | 0.66 | 0.850073 |
Target: 5'- uCAGguGCGGCCUCaGCgccuucgacgGCaucuaCCGGGAc -3' miRNA: 3'- -GUCguCGCUGGAGaCGa---------CGa----GGUCCU- -5' |
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9003 | 3' | -58.8 | NC_002512.2 | + | 146602 | 0.66 | 0.857653 |
Target: 5'- aCGGCGGCcccagacGCCUCUGCUGCcgacgauccgCCAGc- -3' miRNA: 3'- -GUCGUCGc------UGGAGACGACGa---------GGUCcu -5' |
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9003 | 3' | -58.8 | NC_002512.2 | + | 122268 | 0.66 | 0.865042 |
Target: 5'- gGGCAGCcGCCcgacUCgcuggUGCUGCUCCuGGu -3' miRNA: 3'- gUCGUCGcUGG----AG-----ACGACGAGGuCCu -5' |
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9003 | 3' | -58.8 | NC_002512.2 | + | 135097 | 0.66 | 0.865042 |
Target: 5'- gAGCAGuCGAUCcaggaGCUGCUCCGGa- -3' miRNA: 3'- gUCGUC-GCUGGaga--CGACGAGGUCcu -5' |
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9003 | 3' | -58.8 | NC_002512.2 | + | 196758 | 0.66 | 0.865042 |
Target: 5'- cCGGCGGCGugUaCUGCUacgacCUgCAGGAg -3' miRNA: 3'- -GUCGUCGCugGaGACGAc----GAgGUCCU- -5' |
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9003 | 3' | -58.8 | NC_002512.2 | + | 94944 | 0.66 | 0.865042 |
Target: 5'- aCAGCguccgGGCGGCCUC-GCUcGCgUUCAGGu -3' miRNA: 3'- -GUCG-----UCGCUGGAGaCGA-CG-AGGUCCu -5' |
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9003 | 3' | -58.8 | NC_002512.2 | + | 34855 | 0.66 | 0.855399 |
Target: 5'- -cGCGGCGGCUUCUucgucgccgucgucGCcGCcgCCGGGAc -3' miRNA: 3'- guCGUCGCUGGAGA--------------CGaCGa-GGUCCU- -5' |
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9003 | 3' | -58.8 | NC_002512.2 | + | 122076 | 0.66 | 0.853128 |
Target: 5'- aCAGCGGgGgcugcgacaugcggaACCUCUGCaacccGCUcacCCAGGAg -3' miRNA: 3'- -GUCGUCgC---------------UGGAGACGa----CGA---GGUCCU- -5' |
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9003 | 3' | -58.8 | NC_002512.2 | + | 110766 | 0.66 | 0.842307 |
Target: 5'- cCGGUAGCGcACCUCcgcaGCUGCgCCgAGGc -3' miRNA: 3'- -GUCGUCGC-UGGAGa---CGACGaGG-UCCu -5' |
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9003 | 3' | -58.8 | NC_002512.2 | + | 67186 | 0.66 | 0.834362 |
Target: 5'- aAGCGG-GAgCUgCUGCUGCuuacauagucgUCCGGGAu -3' miRNA: 3'- gUCGUCgCUgGA-GACGACG-----------AGGUCCU- -5' |
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9003 | 3' | -58.8 | NC_002512.2 | + | 119251 | 0.66 | 0.842307 |
Target: 5'- gCGGCuggaucccGGCGACCccauggUCUGCgccGC-CCAGGAc -3' miRNA: 3'- -GUCG--------UCGCUGG------AGACGa--CGaGGUCCU- -5' |
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9003 | 3' | -58.8 | NC_002512.2 | + | 113638 | 0.67 | 0.826243 |
Target: 5'- gCAGCaccugcagGGUGGCCUCgugGUU-CUCCGGGGg -3' miRNA: 3'- -GUCG--------UCGCUGGAGa--CGAcGAGGUCCU- -5' |
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9003 | 3' | -58.8 | NC_002512.2 | + | 4554 | 0.67 | 0.826243 |
Target: 5'- gCGGC-GCGACCgacggCUGCgGCgUCUGGGGc -3' miRNA: 3'- -GUCGuCGCUGGa----GACGaCG-AGGUCCU- -5' |
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9003 | 3' | -58.8 | NC_002512.2 | + | 135049 | 0.67 | 0.826243 |
Target: 5'- -cGCGGCcacgcucuuCCUCcgGCgGCUCCGGGAc -3' miRNA: 3'- guCGUCGcu-------GGAGa-CGaCGAGGUCCU- -5' |
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9003 | 3' | -58.8 | NC_002512.2 | + | 108426 | 0.67 | 0.815442 |
Target: 5'- aCGGCGGCGGgcgcggggcggaccCCUCaGg-GCUCCGGGGc -3' miRNA: 3'- -GUCGUCGCU--------------GGAGaCgaCGAGGUCCU- -5' |
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9003 | 3' | -58.8 | NC_002512.2 | + | 2302 | 0.67 | 0.800922 |
Target: 5'- gGGUGGCgGGgCUCUGCUGCgCCGGcGGu -3' miRNA: 3'- gUCGUCG-CUgGAGACGACGaGGUC-CU- -5' |
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9003 | 3' | -58.8 | NC_002512.2 | + | 138024 | 0.67 | 0.792184 |
Target: 5'- cCGGaCGGCGGCCUCgGggGCaugagCCGGGAc -3' miRNA: 3'- -GUC-GUCGCUGGAGaCgaCGa----GGUCCU- -5' |
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9003 | 3' | -58.8 | NC_002512.2 | + | 115738 | 0.67 | 0.826243 |
Target: 5'- gGGCccgGGuCGuCCUCUgccgGCUGCUCCuGGAc -3' miRNA: 3'- gUCG---UC-GCuGGAGA----CGACGAGGuCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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