Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9003 | 3' | -58.8 | NC_002512.2 | + | 115738 | 0.67 | 0.826243 |
Target: 5'- gGGCccgGGuCGuCCUCUgccgGCUGCUCCuGGAc -3' miRNA: 3'- gUCG---UC-GCuGGAGA----CGACGAGGuCCU- -5' |
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9003 | 3' | -58.8 | NC_002512.2 | + | 138024 | 0.67 | 0.792184 |
Target: 5'- cCGGaCGGCGGCCUCgGggGCaugagCCGGGAc -3' miRNA: 3'- -GUC-GUCGCUGGAGaCgaCGa----GGUCCU- -5' |
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9003 | 3' | -58.8 | NC_002512.2 | + | 2302 | 0.67 | 0.800922 |
Target: 5'- gGGUGGCgGGgCUCUGCUGCgCCGGcGGu -3' miRNA: 3'- gUCGUCG-CUgGAGACGACGaGGUC-CU- -5' |
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9003 | 3' | -58.8 | NC_002512.2 | + | 108426 | 0.67 | 0.815442 |
Target: 5'- aCGGCGGCGGgcgcggggcggaccCCUCaGg-GCUCCGGGGc -3' miRNA: 3'- -GUCGUCGCU--------------GGAGaCgaCGAGGUCCU- -5' |
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9003 | 3' | -58.8 | NC_002512.2 | + | 59730 | 0.67 | 0.817959 |
Target: 5'- uGGCGGUGAuCCgggccCUGCUGCUggaCgAGGAg -3' miRNA: 3'- gUCGUCGCU-GGa----GACGACGA---GgUCCU- -5' |
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9003 | 3' | -58.8 | NC_002512.2 | + | 80678 | 0.67 | 0.817959 |
Target: 5'- gCGGCGGCGGCgaCggggGCgagcgGCgUCCGGGGg -3' miRNA: 3'- -GUCGUCGCUGgaGa---CGa----CG-AGGUCCU- -5' |
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9003 | 3' | -58.8 | NC_002512.2 | + | 44563 | 0.67 | 0.821292 |
Target: 5'- gGGCGGCGAcgcagacgggcagcuCCUC-GCgcccCUCCAGGAc -3' miRNA: 3'- gUCGUCGCU---------------GGAGaCGac--GAGGUCCU- -5' |
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9003 | 3' | -58.8 | NC_002512.2 | + | 4554 | 0.67 | 0.826243 |
Target: 5'- gCGGC-GCGACCgacggCUGCgGCgUCUGGGGc -3' miRNA: 3'- -GUCGuCGCUGGa----GACGaCG-AGGUCCU- -5' |
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9003 | 3' | -58.8 | NC_002512.2 | + | 113638 | 0.67 | 0.826243 |
Target: 5'- gCAGCaccugcagGGUGGCCUCgugGUU-CUCCGGGGg -3' miRNA: 3'- -GUCG--------UCGCUGGAGa--CGAcGAGGUCCU- -5' |
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9003 | 3' | -58.8 | NC_002512.2 | + | 110606 | 0.68 | 0.755957 |
Target: 5'- uCAGCAGCaug--CUGCUGUccUCCAGGGc -3' miRNA: 3'- -GUCGUCGcuggaGACGACG--AGGUCCU- -5' |
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9003 | 3' | -58.8 | NC_002512.2 | + | 107503 | 0.68 | 0.737194 |
Target: 5'- -cGCAGCGGUCUCUGCgGCUggaCCcGGAa -3' miRNA: 3'- guCGUCGCUGGAGACGaCGA---GGuCCU- -5' |
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9003 | 3' | -58.8 | NC_002512.2 | + | 103566 | 0.69 | 0.698704 |
Target: 5'- -cGCGGCGGCCUC-GUcG-UCCAGGAg -3' miRNA: 3'- guCGUCGCUGGAGaCGaCgAGGUCCU- -5' |
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9003 | 3' | -58.8 | NC_002512.2 | + | 48848 | 0.71 | 0.590024 |
Target: 5'- cCGGCuguGCGGCCUC--CUGC-CCAGGAc -3' miRNA: 3'- -GUCGu--CGCUGGAGacGACGaGGUCCU- -5' |
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9003 | 3' | -58.8 | NC_002512.2 | + | 66869 | 0.71 | 0.590024 |
Target: 5'- aGGCgauGGUGACCUCggGCcGCUCgAGGAa -3' miRNA: 3'- gUCG---UCGCUGGAGa-CGaCGAGgUCCU- -5' |
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9003 | 3' | -58.8 | NC_002512.2 | + | 84395 | 0.71 | 0.599898 |
Target: 5'- cCGGCAGCGuCCUCUGCgGgaCgGGGu -3' miRNA: 3'- -GUCGUCGCuGGAGACGaCgaGgUCCu -5' |
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9003 | 3' | -58.8 | NC_002512.2 | + | 119792 | 0.7 | 0.609795 |
Target: 5'- aCAGCAGCugcaccGGCCUCUGCg---CCAGGu -3' miRNA: 3'- -GUCGUCG------CUGGAGACGacgaGGUCCu -5' |
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9003 | 3' | -58.8 | NC_002512.2 | + | 134408 | 0.7 | 0.619706 |
Target: 5'- gCGGCGGCGGuuCCgggUCUGCgUGC-CCAGGGg -3' miRNA: 3'- -GUCGUCGCU--GG---AGACG-ACGaGGUCCU- -5' |
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9003 | 3' | -58.8 | NC_002512.2 | + | 119386 | 0.7 | 0.656402 |
Target: 5'- -cGCGGCGGCC-CUGCUGCagggCCgcgugccgcugcucGGGAg -3' miRNA: 3'- guCGUCGCUGGaGACGACGa---GG--------------UCCU- -5' |
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9003 | 3' | -58.8 | NC_002512.2 | + | 83056 | 0.69 | 0.67911 |
Target: 5'- gGGCcaGGCGACCUCgcgcGCgaagGuCUCCAGGu -3' miRNA: 3'- gUCG--UCGCUGGAGa---CGa---C-GAGGUCCu -5' |
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9003 | 3' | -58.8 | NC_002512.2 | + | 75073 | 0.69 | 0.67911 |
Target: 5'- gGGCGGCGACgUCgagGCgccGUUUCGGGGg -3' miRNA: 3'- gUCGUCGCUGgAGa--CGa--CGAGGUCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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