miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9003 3' -58.8 NC_002512.2 + 181804 1.08 0.002556
Target:  5'- uCAGCAGCGACCUCUGCUGCUCCAGGAu -3'
miRNA:   3'- -GUCGUCGCUGGAGACGACGAGGUCCU- -5'
9003 3' -58.8 NC_002512.2 + 72902 0.75 0.388953
Target:  5'- aAGCGGCGGCCgaaGUUGC-CCAGGAu -3'
miRNA:   3'- gUCGUCGCUGGagaCGACGaGGUCCU- -5'
9003 3' -58.8 NC_002512.2 + 201800 0.72 0.512561
Target:  5'- gGGCGGCGACCUCUccgccgucuccGCcGCgcCCGGGGg -3'
miRNA:   3'- gUCGUCGCUGGAGA-----------CGaCGa-GGUCCU- -5'
9003 3' -58.8 NC_002512.2 + 48848 0.71 0.590024
Target:  5'- cCGGCuguGCGGCCUC--CUGC-CCAGGAc -3'
miRNA:   3'- -GUCGu--CGCUGGAGacGACGaGGUCCU- -5'
9003 3' -58.8 NC_002512.2 + 66869 0.71 0.590024
Target:  5'- aGGCgauGGUGACCUCggGCcGCUCgAGGAa -3'
miRNA:   3'- gUCG---UCGCUGGAGa-CGaCGAGgUCCU- -5'
9003 3' -58.8 NC_002512.2 + 153084 0.71 0.590024
Target:  5'- aGGCGGCGAUCgaaGCUGCuuccuggaUCCGGGAc -3'
miRNA:   3'- gUCGUCGCUGGagaCGACG--------AGGUCCU- -5'
9003 3' -58.8 NC_002512.2 + 84395 0.71 0.599898
Target:  5'- cCGGCAGCGuCCUCUGCgGgaCgGGGu -3'
miRNA:   3'- -GUCGUCGCuGGAGACGaCgaGgUCCu -5'
9003 3' -58.8 NC_002512.2 + 119792 0.7 0.609795
Target:  5'- aCAGCAGCugcaccGGCCUCUGCg---CCAGGu -3'
miRNA:   3'- -GUCGUCG------CUGGAGACGacgaGGUCCu -5'
9003 3' -58.8 NC_002512.2 + 215162 0.7 0.619706
Target:  5'- gAGCAcCuGGCCgucCUGCUGCUCgGGGAg -3'
miRNA:   3'- gUCGUcG-CUGGa--GACGACGAGgUCCU- -5'
9003 3' -58.8 NC_002512.2 + 186523 0.7 0.619706
Target:  5'- cCAGCGuCGACCUCUGCgUGCa-CGGGGc -3'
miRNA:   3'- -GUCGUcGCUGGAGACG-ACGagGUCCU- -5'
9003 3' -58.8 NC_002512.2 + 134408 0.7 0.619706
Target:  5'- gCGGCGGCGGuuCCgggUCUGCgUGC-CCAGGGg -3'
miRNA:   3'- -GUCGUCGCU--GG---AGACG-ACGaGGUCCU- -5'
9003 3' -58.8 NC_002512.2 + 182062 0.7 0.629627
Target:  5'- cCAGCcGCgccGACCUCaGCcgcgGCUCCGGGGu -3'
miRNA:   3'- -GUCGuCG---CUGGAGaCGa---CGAGGUCCU- -5'
9003 3' -58.8 NC_002512.2 + 90142 0.7 0.629627
Target:  5'- cCAGUAGaCGgacaggucccGCCaCUGCUGCUCCuGGAu -3'
miRNA:   3'- -GUCGUC-GC----------UGGaGACGACGAGGuCCU- -5'
9003 3' -58.8 NC_002512.2 + 180843 0.7 0.629627
Target:  5'- -cGuCAGUGACCUCaGCaGCUCgAGGAu -3'
miRNA:   3'- guC-GUCGCUGGAGaCGaCGAGgUCCU- -5'
9003 3' -58.8 NC_002512.2 + 119386 0.7 0.656402
Target:  5'- -cGCGGCGGCC-CUGCUGCagggCCgcgugccgcugcucGGGAg -3'
miRNA:   3'- guCGUCGCUGGaGACGACGa---GG--------------UCCU- -5'
9003 3' -58.8 NC_002512.2 + 170421 0.69 0.67911
Target:  5'- cCAGCAGCcACUUCUGCUGCgggucccgCCgcAGGc -3'
miRNA:   3'- -GUCGUCGcUGGAGACGACGa-------GG--UCCu -5'
9003 3' -58.8 NC_002512.2 + 75073 0.69 0.67911
Target:  5'- gGGCGGCGACgUCgagGCgccGUUUCGGGGg -3'
miRNA:   3'- gUCGUCGCUGgAGa--CGa--CGAGGUCCU- -5'
9003 3' -58.8 NC_002512.2 + 83056 0.69 0.67911
Target:  5'- gGGCcaGGCGACCUCgcgcGCgaagGuCUCCAGGu -3'
miRNA:   3'- gUCG--UCGCUGGAGa---CGa---C-GAGGUCCu -5'
9003 3' -58.8 NC_002512.2 + 103566 0.69 0.698704
Target:  5'- -cGCGGCGGCCUC-GUcG-UCCAGGAg -3'
miRNA:   3'- guCGUCGCUGGAGaCGaCgAGGUCCU- -5'
9003 3' -58.8 NC_002512.2 + 130681 0.68 0.726724
Target:  5'- aCGGCGGCGGCCgcggagaUCUGgaGgaUCAGGGc -3'
miRNA:   3'- -GUCGUCGCUGG-------AGACgaCgaGGUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.