miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9003 3' -58.8 NC_002512.2 + 2302 0.67 0.800922
Target:  5'- gGGUGGCgGGgCUCUGCUGCgCCGGcGGu -3'
miRNA:   3'- gUCGUCG-CUgGAGACGACGaGGUC-CU- -5'
9003 3' -58.8 NC_002512.2 + 4554 0.67 0.826243
Target:  5'- gCGGC-GCGACCgacggCUGCgGCgUCUGGGGc -3'
miRNA:   3'- -GUCGuCGCUGGa----GACGaCG-AGGUCCU- -5'
9003 3' -58.8 NC_002512.2 + 34855 0.66 0.855399
Target:  5'- -cGCGGCGGCUUCUucgucgccgucgucGCcGCcgCCGGGAc -3'
miRNA:   3'- guCGUCGCUGGAGA--------------CGaCGa-GGUCCU- -5'
9003 3' -58.8 NC_002512.2 + 44563 0.67 0.821292
Target:  5'- gGGCGGCGAcgcagacgggcagcuCCUC-GCgcccCUCCAGGAc -3'
miRNA:   3'- gUCGUCGCU---------------GGAGaCGac--GAGGUCCU- -5'
9003 3' -58.8 NC_002512.2 + 48848 0.71 0.590024
Target:  5'- cCGGCuguGCGGCCUC--CUGC-CCAGGAc -3'
miRNA:   3'- -GUCGu--CGCUGGAGacGACGaGGUCCU- -5'
9003 3' -58.8 NC_002512.2 + 51193 0.67 0.826243
Target:  5'- -cGCGGCGGCCgc-GCUGCgggCCucGGAc -3'
miRNA:   3'- guCGUCGCUGGagaCGACGa--GGu-CCU- -5'
9003 3' -58.8 NC_002512.2 + 59730 0.67 0.817959
Target:  5'- uGGCGGUGAuCCgggccCUGCUGCUggaCgAGGAg -3'
miRNA:   3'- gUCGUCGCU-GGa----GACGACGA---GgUCCU- -5'
9003 3' -58.8 NC_002512.2 + 66869 0.71 0.590024
Target:  5'- aGGCgauGGUGACCUCggGCcGCUCgAGGAa -3'
miRNA:   3'- gUCG---UCGCUGGAGa-CGaCGAGgUCCU- -5'
9003 3' -58.8 NC_002512.2 + 67186 0.66 0.834362
Target:  5'- aAGCGG-GAgCUgCUGCUGCuuacauagucgUCCGGGAu -3'
miRNA:   3'- gUCGUCgCUgGA-GACGACG-----------AGGUCCU- -5'
9003 3' -58.8 NC_002512.2 + 72902 0.75 0.388953
Target:  5'- aAGCGGCGGCCgaaGUUGC-CCAGGAu -3'
miRNA:   3'- gUCGUCGCUGGagaCGACGaGGUCCU- -5'
9003 3' -58.8 NC_002512.2 + 75073 0.69 0.67911
Target:  5'- gGGCGGCGACgUCgagGCgccGUUUCGGGGg -3'
miRNA:   3'- gUCGUCGCUGgAGa--CGa--CGAGGUCCU- -5'
9003 3' -58.8 NC_002512.2 + 80678 0.67 0.817959
Target:  5'- gCGGCGGCGGCgaCggggGCgagcgGCgUCCGGGGg -3'
miRNA:   3'- -GUCGUCGCUGgaGa---CGa----CG-AGGUCCU- -5'
9003 3' -58.8 NC_002512.2 + 83056 0.69 0.67911
Target:  5'- gGGCcaGGCGACCUCgcgcGCgaagGuCUCCAGGu -3'
miRNA:   3'- gUCG--UCGCUGGAGa---CGa---C-GAGGUCCu -5'
9003 3' -58.8 NC_002512.2 + 84395 0.71 0.599898
Target:  5'- cCGGCAGCGuCCUCUGCgGgaCgGGGu -3'
miRNA:   3'- -GUCGUCGCuGGAGACGaCgaGgUCCu -5'
9003 3' -58.8 NC_002512.2 + 90142 0.7 0.629627
Target:  5'- cCAGUAGaCGgacaggucccGCCaCUGCUGCUCCuGGAu -3'
miRNA:   3'- -GUCGUC-GC----------UGGaGACGACGAGGuCCU- -5'
9003 3' -58.8 NC_002512.2 + 90451 0.67 0.8146
Target:  5'- gGGCGGCGGCCgggcCaGCUGCggguccccgaucaCCGGGGc -3'
miRNA:   3'- gUCGUCGCUGGa---GaCGACGa------------GGUCCU- -5'
9003 3' -58.8 NC_002512.2 + 93043 0.68 0.755957
Target:  5'- aGGCGG-GACggCUGCUGCcCCAGGc -3'
miRNA:   3'- gUCGUCgCUGgaGACGACGaGGUCCu -5'
9003 3' -58.8 NC_002512.2 + 94944 0.66 0.865042
Target:  5'- aCAGCguccgGGCGGCCUC-GCUcGCgUUCAGGu -3'
miRNA:   3'- -GUCG-----UCGCUGGAGaCGA-CG-AGGUCCu -5'
9003 3' -58.8 NC_002512.2 + 102718 0.67 0.826243
Target:  5'- uUAGUGGCGGCCUC-GCgGCagUCCcGGAu -3'
miRNA:   3'- -GUCGUCGCUGGAGaCGaCG--AGGuCCU- -5'
9003 3' -58.8 NC_002512.2 + 103566 0.69 0.698704
Target:  5'- -cGCGGCGGCCUC-GUcG-UCCAGGAg -3'
miRNA:   3'- guCGUCGCUGGAGaCGaCgAGGUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.