miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9009 3' -54.9 NC_002512.2 + 114023 0.66 0.973408
Target:  5'- gGCggGcCCGCCUCGgcGaacgCCUCgAGg -3'
miRNA:   3'- aUGuaCaGGCGGAGCuuCa---GGAGgUC- -5'
9009 3' -54.9 NC_002512.2 + 106641 0.66 0.973408
Target:  5'- aGCGgcgCCGgCUCGGcgaguAGUCCUCCGa -3'
miRNA:   3'- aUGUacaGGCgGAGCU-----UCAGGAGGUc -5'
9009 3' -54.9 NC_002512.2 + 100021 0.66 0.967721
Target:  5'- cGCGUG-CgGCCUCaaGggGcUCCUCCGc -3'
miRNA:   3'- aUGUACaGgCGGAG--CuuC-AGGAGGUc -5'
9009 3' -54.9 NC_002512.2 + 90403 0.66 0.967721
Target:  5'- -cCGUGUCCGCgUgGgcGUCCgcggCCAu -3'
miRNA:   3'- auGUACAGGCGgAgCuuCAGGa---GGUc -5'
9009 3' -54.9 NC_002512.2 + 104971 0.66 0.965858
Target:  5'- cGCcggGUCCGCCUCGAGGUaggggagguagcCCGGg -3'
miRNA:   3'- aUGua-CAGGCGGAGCUUCAgga---------GGUC- -5'
9009 3' -54.9 NC_002512.2 + 110796 0.66 0.964575
Target:  5'- cACcagGUCCGCCgCGAuGUUCUCCu- -3'
miRNA:   3'- aUGua-CAGGCGGaGCUuCAGGAGGuc -5'
9009 3' -54.9 NC_002512.2 + 98351 0.66 0.961221
Target:  5'- gGCGgccccUCCGCCUCGucucCCUCCGGc -3'
miRNA:   3'- aUGUac---AGGCGGAGCuucaGGAGGUC- -5'
9009 3' -54.9 NC_002512.2 + 67963 0.66 0.961221
Target:  5'- cGCcgGUUCGCCgUGgcGUCCgCCGGa -3'
miRNA:   3'- aUGuaCAGGCGGaGCuuCAGGaGGUC- -5'
9009 3' -54.9 NC_002512.2 + 223501 0.66 0.961221
Target:  5'- cUGCccGUuaacCCGCCUCGAAGUCCg---- -3'
miRNA:   3'- -AUGuaCA----GGCGGAGCUUCAGGagguc -5'
9009 3' -54.9 NC_002512.2 + 109589 0.67 0.957653
Target:  5'- cGgAUGUCCGCCcUGAAcauGUCCagCCGGa -3'
miRNA:   3'- aUgUACAGGCGGaGCUU---CAGGa-GGUC- -5'
9009 3' -54.9 NC_002512.2 + 172939 0.67 0.957653
Target:  5'- cACcuucgCCGCCUCGGuGGUgCUCCGGa -3'
miRNA:   3'- aUGuaca-GGCGGAGCU-UCAgGAGGUC- -5'
9009 3' -54.9 NC_002512.2 + 110550 0.67 0.957653
Target:  5'- gGCGUuUCCGCCcccgcgCGGgaGGUCCUgCCGGg -3'
miRNA:   3'- aUGUAcAGGCGGa-----GCU--UCAGGA-GGUC- -5'
9009 3' -54.9 NC_002512.2 + 80069 0.67 0.953866
Target:  5'- cGCuc-UCCGCCUCGcuGUCCUCg-- -3'
miRNA:   3'- aUGuacAGGCGGAGCuuCAGGAGguc -5'
9009 3' -54.9 NC_002512.2 + 176732 0.67 0.953866
Target:  5'- gUugAUcUCCGCCgUC-AGGUCCUUCAGg -3'
miRNA:   3'- -AugUAcAGGCGG-AGcUUCAGGAGGUC- -5'
9009 3' -54.9 NC_002512.2 + 17273 0.67 0.949858
Target:  5'- ----cGUCCGCgucCUCGucGUCCUCCu- -3'
miRNA:   3'- auguaCAGGCG---GAGCuuCAGGAGGuc -5'
9009 3' -54.9 NC_002512.2 + 210940 0.67 0.949858
Target:  5'- aUGCAguUCCGCCccgaggccaaCGAGGUCgUCCGGg -3'
miRNA:   3'- -AUGUacAGGCGGa---------GCUUCAGgAGGUC- -5'
9009 3' -54.9 NC_002512.2 + 218013 0.67 0.941162
Target:  5'- gGgAUGUCCaccaCCUCGuaggGGUCCUCCGc -3'
miRNA:   3'- aUgUACAGGc---GGAGCu---UCAGGAGGUc -5'
9009 3' -54.9 NC_002512.2 + 78928 0.67 0.936469
Target:  5'- cGCGaGcCCGCCUCcGAGUCCgcggccgCCGGa -3'
miRNA:   3'- aUGUaCaGGCGGAGcUUCAGGa------GGUC- -5'
9009 3' -54.9 NC_002512.2 + 80139 0.68 0.931545
Target:  5'- cGCGgggucGUCCcCCUCGucGUCCUCCu- -3'
miRNA:   3'- aUGUa----CAGGcGGAGCuuCAGGAGGuc -5'
9009 3' -54.9 NC_002512.2 + 181126 0.68 0.928479
Target:  5'- gACAcGUCCGUCUccagggccaggaCGAacgacuccgcggccaGGUCCUCCAGc -3'
miRNA:   3'- aUGUaCAGGCGGA------------GCU---------------UCAGGAGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.