miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9009 5' -58.6 NC_002512.2 + 36968 0.66 0.906633
Target:  5'- cCCUGGcaucGGAggcggcUCUggACCGCCGCGg- -3'
miRNA:   3'- aGGACCu---CCU------AGAagUGGCGGCGCgc -5'
9009 5' -58.6 NC_002512.2 + 167257 0.66 0.906633
Target:  5'- gUCCUGGucaagguggcgGGGAagCUggcCGCCGCCGUcacccGCGa -3'
miRNA:   3'- -AGGACC-----------UCCUa-GAa--GUGGCGGCG-----CGC- -5'
9009 5' -58.6 NC_002512.2 + 110373 0.66 0.906633
Target:  5'- aCCUGGugguGGcgCUgaUCAUgGCCGUGUa -3'
miRNA:   3'- aGGACCu---CCuaGA--AGUGgCGGCGCGc -5'
9009 5' -58.6 NC_002512.2 + 16024 0.66 0.904863
Target:  5'- gCCgGGuggggaagggcagcGGGAUCUUCucccCgCGCCGCGCc -3'
miRNA:   3'- aGGaCC--------------UCCUAGAAGu---G-GCGGCGCGc -5'
9009 5' -58.6 NC_002512.2 + 121048 0.66 0.900658
Target:  5'- cUCUGGGccGGGUaccCGCCGCCcgagGCGCGg -3'
miRNA:   3'- aGGACCU--CCUAgaaGUGGCGG----CGCGC- -5'
9009 5' -58.6 NC_002512.2 + 25063 0.66 0.900658
Target:  5'- cUCCcGGAcGGA-----GCCGCCGCGCc -3'
miRNA:   3'- -AGGaCCU-CCUagaagUGGCGGCGCGc -5'
9009 5' -58.6 NC_002512.2 + 91909 0.66 0.900658
Target:  5'- cUCCUGGGGcGG-CggcgCGCCGUCG-GCGg -3'
miRNA:   3'- -AGGACCUC-CUaGaa--GUGGCGGCgCGC- -5'
9009 5' -58.6 NC_002512.2 + 110617 0.66 0.896351
Target:  5'- gUCCUGGgcggcgcagaccauGGGGUCgccgggauccaGCCGCCGCuCGa -3'
miRNA:   3'- -AGGACC--------------UCCUAGaag--------UGGCGGCGcGC- -5'
9009 5' -58.6 NC_002512.2 + 30531 0.66 0.894473
Target:  5'- -gCUGGAGccgguGAUCUcguUCGCCGUgGgCGCGg -3'
miRNA:   3'- agGACCUC-----CUAGA---AGUGGCGgC-GCGC- -5'
9009 5' -58.6 NC_002512.2 + 134178 0.66 0.894473
Target:  5'- cCCUGGcGGcguUCUUCGgCGaCGUGCGg -3'
miRNA:   3'- aGGACCuCCu--AGAAGUgGCgGCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 45065 0.66 0.888079
Target:  5'- --aUGGAGGug--UCGCgGCCGgCGCGg -3'
miRNA:   3'- aggACCUCCuagaAGUGgCGGC-GCGC- -5'
9009 5' -58.6 NC_002512.2 + 193231 0.66 0.888079
Target:  5'- gCCUGG-GGGUCa--ACUGCCGacgGCGg -3'
miRNA:   3'- aGGACCuCCUAGaagUGGCGGCg--CGC- -5'
9009 5' -58.6 NC_002512.2 + 30589 0.66 0.888079
Target:  5'- gUCCUGGAGGAggc-CACCaaCCggaggGCGCGg -3'
miRNA:   3'- -AGGACCUCCUagaaGUGGc-GG-----CGCGC- -5'
9009 5' -58.6 NC_002512.2 + 72030 0.66 0.888079
Target:  5'- cCCUGGAuGGGcagcUugCGCUGCGCGu -3'
miRNA:   3'- aGGACCU-CCUagaaGugGCGGCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 127830 0.66 0.881481
Target:  5'- cUCCgGGAGGucGUCggcggCGuCCGCCGCGa- -3'
miRNA:   3'- -AGGaCCUCC--UAGaa---GU-GGCGGCGCgc -5'
9009 5' -58.6 NC_002512.2 + 185429 0.66 0.881481
Target:  5'- cCCUGGAGG-UCUUCGagGCCGUc-- -3'
miRNA:   3'- aGGACCUCCuAGAAGUggCGGCGcgc -5'
9009 5' -58.6 NC_002512.2 + 128902 0.66 0.874681
Target:  5'- gCCUGGc-GAUCcgC-CCGCCGCGgGa -3'
miRNA:   3'- aGGACCucCUAGaaGuGGCGGCGCgC- -5'
9009 5' -58.6 NC_002512.2 + 215093 0.66 0.874681
Target:  5'- aCC--GAGGAcuUCgUCGCCGCCGCGg- -3'
miRNA:   3'- aGGacCUCCU--AGaAGUGGCGGCGCgc -5'
9009 5' -58.6 NC_002512.2 + 126284 0.66 0.874681
Target:  5'- aCCgGGAGGccGUCgaCACCGCCcuCGUGg -3'
miRNA:   3'- aGGaCCUCC--UAGaaGUGGCGGc-GCGC- -5'
9009 5' -58.6 NC_002512.2 + 195789 0.66 0.874681
Target:  5'- aUCC-GGGGGAUgUUCcaauuUgGCCGCGCc -3'
miRNA:   3'- -AGGaCCUCCUAgAAGu----GgCGGCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.