miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9009 5' -58.6 NC_002512.2 + 184951 0.67 0.845563
Target:  5'- gCCUGGcucgagagcauGGAgcg-CGuCCGCCGCGCGg -3'
miRNA:   3'- aGGACCu----------CCUagaaGU-GGCGGCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 175189 0.68 0.813637
Target:  5'- ---cGGGGGGUUcucccgcgcgUUCAUCGCCGCGUc -3'
miRNA:   3'- aggaCCUCCUAG----------AAGUGGCGGCGCGc -5'
9009 5' -58.6 NC_002512.2 + 174065 1.09 0.002606
Target:  5'- cUCCUGGAGGAUCUUCACCGCCGCGCGg -3'
miRNA:   3'- -AGGACCUCCUAGAAGUGGCGGCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 173327 0.67 0.85312
Target:  5'- gCCUGcGGGGUCUUCGgucCCGgCaCGCGCc -3'
miRNA:   3'- aGGACcUCCUAGAAGU---GGC-G-GCGCGc -5'
9009 5' -58.6 NC_002512.2 + 170906 0.67 0.837829
Target:  5'- gCCUGGAcacgcuGcgCUUCgagccgauGCUGCCGCGCGu -3'
miRNA:   3'- aGGACCUc-----CuaGAAG--------UGGCGGCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 167257 0.66 0.906633
Target:  5'- gUCCUGGucaagguggcgGGGAagCUggcCGCCGCCGUcacccGCGa -3'
miRNA:   3'- -AGGACC-----------UCCUa-GAa--GUGGCGGCG-----CGC- -5'
9009 5' -58.6 NC_002512.2 + 166385 0.67 0.845563
Target:  5'- aUCCUGGAGGAguguu-CCGCC-CGgGg -3'
miRNA:   3'- -AGGACCUCCUagaaguGGCGGcGCgC- -5'
9009 5' -58.6 NC_002512.2 + 153716 0.68 0.813637
Target:  5'- gUCCUGGucGGGUCUcacggCGCUGuCCGUGgGg -3'
miRNA:   3'- -AGGACCu-CCUAGAa----GUGGC-GGCGCgC- -5'
9009 5' -58.6 NC_002512.2 + 149290 0.74 0.485416
Target:  5'- gCgaGGAGGGcgagaUCgUCgACCGCCGCGCGg -3'
miRNA:   3'- aGgaCCUCCU-----AGaAG-UGGCGGCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 148827 0.72 0.58906
Target:  5'- gUCCUGGGGGcgGUCcgggcgCACCGCUGC-CGg -3'
miRNA:   3'- -AGGACCUCC--UAGaa----GUGGCGGCGcGC- -5'
9009 5' -58.6 NC_002512.2 + 146904 0.71 0.637718
Target:  5'- -gCUGGAGGcggccgacGUCUUC-CgCGCCGUGCGc -3'
miRNA:   3'- agGACCUCC--------UAGAAGuG-GCGGCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 146142 0.67 0.829926
Target:  5'- gCCgccGGAagaucggcaugcGGAUCgucauccCGCUGCCGCGCGg -3'
miRNA:   3'- aGGa--CCU------------CCUAGaa-----GUGGCGGCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 145403 0.67 0.829926
Target:  5'- gUCCgGGGuccGGGUCUUCuucggcucguCCGCCGCGg- -3'
miRNA:   3'- -AGGaCCU---CCUAGAAGu---------GGCGGCGCgc -5'
9009 5' -58.6 NC_002512.2 + 143531 0.67 0.844797
Target:  5'- gCCUGGcGGccUCgUCGCCgucggcgGCCGCGCGu -3'
miRNA:   3'- aGGACCuCCu-AGaAGUGG-------CGGCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 137781 0.72 0.608482
Target:  5'- gUCUGGAGG-UCggCGCUcggcggGCCGCGCGu -3'
miRNA:   3'- aGGACCUCCuAGaaGUGG------CGGCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 135792 0.67 0.829926
Target:  5'- ---cGGAGGAgUCggaccggcCGCCGCCGuCGCGg -3'
miRNA:   3'- aggaCCUCCU-AGaa------GUGGCGGC-GCGC- -5'
9009 5' -58.6 NC_002512.2 + 135014 0.67 0.850872
Target:  5'- gUCCUGGAGGAUUcggGCCggcggacggaucucGCCGCGg- -3'
miRNA:   3'- -AGGACCUCCUAGaagUGG--------------CGGCGCgc -5'
9009 5' -58.6 NC_002512.2 + 134291 0.68 0.793305
Target:  5'- gUCCcGGAGGAUCgucuucgaggacgUCGCCgggGCCgGCGCc -3'
miRNA:   3'- -AGGaCCUCCUAGa------------AGUGG---CGG-CGCGc -5'
9009 5' -58.6 NC_002512.2 + 134178 0.66 0.894473
Target:  5'- cCCUGGcGGcguUCUUCGgCGaCGUGCGg -3'
miRNA:   3'- aGGACCuCCu--AGAAGUgGCgGCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 133653 0.74 0.494518
Target:  5'- gUCC-GGGGcGGUCgcCGCCGCCGcCGCGg -3'
miRNA:   3'- -AGGaCCUC-CUAGaaGUGGCGGC-GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.