miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9009 5' -58.6 NC_002512.2 + 145403 0.67 0.829926
Target:  5'- gUCCgGGGuccGGGUCUUCuucggcucguCCGCCGCGg- -3'
miRNA:   3'- -AGGaCCU---CCUAGAAGu---------GGCGGCGCgc -5'
9009 5' -58.6 NC_002512.2 + 143531 0.67 0.844797
Target:  5'- gCCUGGcGGccUCgUCGCCgucggcgGCCGCGCGu -3'
miRNA:   3'- aGGACCuCCu-AGaAGUGG-------CGGCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 35803 0.66 0.873298
Target:  5'- uUCUUGGAGGAUCgcggacaguCUGCUGCaGCu -3'
miRNA:   3'- -AGGACCUCCUAGaagu-----GGCGGCG-CGc -5'
9009 5' -58.6 NC_002512.2 + 110617 0.66 0.896351
Target:  5'- gUCCUGGgcggcgcagaccauGGGGUCgccgggauccaGCCGCCGCuCGa -3'
miRNA:   3'- -AGGACC--------------UCCUAGaag--------UGGCGGCGcGC- -5'
9009 5' -58.6 NC_002512.2 + 219164 0.71 0.61822
Target:  5'- cUCCgccGAGGA-CUUCGCCGCCGUcgGCu -3'
miRNA:   3'- -AGGac-CUCCUaGAAGUGGCGGCG--CGc -5'
9009 5' -58.6 NC_002512.2 + 100822 0.68 0.805264
Target:  5'- aCCUGGAcgaGGAUgUUCAUCGgCGUGaCGu -3'
miRNA:   3'- aGGACCU---CCUAgAAGUGGCgGCGC-GC- -5'
9009 5' -58.6 NC_002512.2 + 166385 0.67 0.845563
Target:  5'- aUCCUGGAGGAguguu-CCGCC-CGgGg -3'
miRNA:   3'- -AGGACCUCCUagaaguGGCGGcGCgC- -5'
9009 5' -58.6 NC_002512.2 + 121048 0.66 0.900658
Target:  5'- cUCUGGGccGGGUaccCGCCGCCcgagGCGCGg -3'
miRNA:   3'- aGGACCU--CCUAgaaGUGGCGG----CGCGC- -5'
9009 5' -58.6 NC_002512.2 + 125084 0.68 0.805264
Target:  5'- cCCUGGAGuacaa-C-CCGCCGCGCGc -3'
miRNA:   3'- aGGACCUCcuagaaGuGGCGGCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 110373 0.66 0.906633
Target:  5'- aCCUGGugguGGcgCUgaUCAUgGCCGUGUa -3'
miRNA:   3'- aGGACCu---CCuaGA--AGUGgCGGCGCGc -5'
9009 5' -58.6 NC_002512.2 + 184951 0.67 0.845563
Target:  5'- gCCUGGcucgagagcauGGAgcg-CGuCCGCCGCGCGg -3'
miRNA:   3'- aGGACCu----------CCUagaaGU-GGCGGCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 126321 0.67 0.829926
Target:  5'- cUCCUGGAcGA-CgagGCCGCCGCGUc -3'
miRNA:   3'- -AGGACCUcCUaGaagUGGCGGCGCGc -5'
9009 5' -58.6 NC_002512.2 + 124997 0.67 0.85312
Target:  5'- cCCUGGAcccGGccccgucgcgccGUCggCGCCGCCcgcuGCGCGa -3'
miRNA:   3'- aGGACCU---CC------------UAGaaGUGGCGG----CGCGC- -5'
9009 5' -58.6 NC_002512.2 + 185652 0.67 0.861224
Target:  5'- cUCCUGGGGGAcgucgcggggauccUgaaguccuucggucuCUUCugCGCCucgcuGCGCGa -3'
miRNA:   3'- -AGGACCUCCU--------------A---------------GAAGugGCGG-----CGCGC- -5'
9009 5' -58.6 NC_002512.2 + 127830 0.66 0.881481
Target:  5'- cUCCgGGAGGucGUCggcggCGuCCGCCGCGa- -3'
miRNA:   3'- -AGGaCCUCC--UAGaa---GU-GGCGGCGCgc -5'
9009 5' -58.6 NC_002512.2 + 134178 0.66 0.894473
Target:  5'- cCCUGGcGGcguUCUUCGgCGaCGUGCGg -3'
miRNA:   3'- aGGACCuCCu--AGAAGUgGCgGCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 186198 0.73 0.503696
Target:  5'- cUCCUGGAGGGcUCgggCGCCGaugaCGcCGCGg -3'
miRNA:   3'- -AGGACCUCCU-AGaa-GUGGCg---GC-GCGC- -5'
9009 5' -58.6 NC_002512.2 + 120711 0.71 0.61822
Target:  5'- aCCUGG-GGcUCUUCAucCCGgccCCGCGCGa -3'
miRNA:   3'- aGGACCuCCuAGAAGU--GGC---GGCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 211885 0.69 0.752303
Target:  5'- cCCUGGAgcGGGUCaccUUCcgggGCUGCCGCGUc -3'
miRNA:   3'- aGGACCU--CCUAG---AAG----UGGCGGCGCGc -5'
9009 5' -58.6 NC_002512.2 + 91537 0.68 0.775777
Target:  5'- gUCCUGGAGGAggaccaccuggcgCUgaccaCGCCGCUcuCGCGg -3'
miRNA:   3'- -AGGACCUCCUa------------GAa----GUGGCGGc-GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.