miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9025 5' -59.2 NC_002512.2 + 158678 0.66 0.895922
Target:  5'- cGCCGGAucauggccGGCCgggACgGGGAGguGCC-CGAg -3'
miRNA:   3'- -UGGCCU--------CUGGa--UGgCCCUC--UGGaGCU- -5'
9025 5' -59.2 NC_002512.2 + 2809 0.66 0.895922
Target:  5'- gGCCGGcgGGACCcgGCgCGGGcgcGGGCC-CGGa -3'
miRNA:   3'- -UGGCC--UCUGGa-UG-GCCC---UCUGGaGCU- -5'
9025 5' -59.2 NC_002512.2 + 100067 0.66 0.895922
Target:  5'- -aCGGGGGCCgcggGCCGGG-GACggagCGGu -3'
miRNA:   3'- ugGCCUCUGGa---UGGCCCuCUGga--GCU- -5'
9025 5' -59.2 NC_002512.2 + 224698 0.66 0.889634
Target:  5'- uCCGGucGCCU-CgGGGAGACUUCc- -3'
miRNA:   3'- uGGCCucUGGAuGgCCCUCUGGAGcu -5'
9025 5' -59.2 NC_002512.2 + 127790 0.66 0.889634
Target:  5'- gGCCgcacagGGAGACgUGCCGGaAGAaCUCGGg -3'
miRNA:   3'- -UGG------CCUCUGgAUGGCCcUCUgGAGCU- -5'
9025 5' -59.2 NC_002512.2 + 2307 0.66 0.883144
Target:  5'- -gCGGGGcUCUGCUGcgccggcgguccGGAGGCCUCGGu -3'
miRNA:   3'- ugGCCUCuGGAUGGC------------CCUCUGGAGCU- -5'
9025 5' -59.2 NC_002512.2 + 102207 0.66 0.883144
Target:  5'- aGCgGGAGAUCgccgcgGCCGGaGcGGCCcUCGAc -3'
miRNA:   3'- -UGgCCUCUGGa-----UGGCC-CuCUGG-AGCU- -5'
9025 5' -59.2 NC_002512.2 + 134740 0.66 0.883144
Target:  5'- uCCGGuccucGACCcGCCGGGgcGGACCgucCGGu -3'
miRNA:   3'- uGGCCu----CUGGaUGGCCC--UCUGGa--GCU- -5'
9025 5' -59.2 NC_002512.2 + 135344 0.66 0.883144
Target:  5'- cGCCGGGGugCUGCUGGccgucGACCgcuUCGu -3'
miRNA:   3'- -UGGCCUCugGAUGGCCcu---CUGG---AGCu -5'
9025 5' -59.2 NC_002512.2 + 102918 0.66 0.883144
Target:  5'- gACCGcGGACCccUACUGGGAGcGCCagagggUCGAc -3'
miRNA:   3'- -UGGCcUCUGG--AUGGCCCUC-UGG------AGCU- -5'
9025 5' -59.2 NC_002512.2 + 60332 0.66 0.883144
Target:  5'- cGCCGGcgaAGGCCacgccGCCGGGcagccgGGACCcguUCGAg -3'
miRNA:   3'- -UGGCC---UCUGGa----UGGCCC------UCUGG---AGCU- -5'
9025 5' -59.2 NC_002512.2 + 71581 0.66 0.883144
Target:  5'- cGCCGGAcGACCgcgGCCuuGGGGGCCg--- -3'
miRNA:   3'- -UGGCCU-CUGGa--UGGc-CCUCUGGagcu -5'
9025 5' -59.2 NC_002512.2 + 226894 0.66 0.883144
Target:  5'- cCCGG-GACCgggccACgCGGGAGGCCaaGGa -3'
miRNA:   3'- uGGCCuCUGGa----UG-GCCCUCUGGagCU- -5'
9025 5' -59.2 NC_002512.2 + 103768 0.66 0.882484
Target:  5'- --aGGAGAUCUcgaACCGGcGAcaccgccGACCUCGGu -3'
miRNA:   3'- uggCCUCUGGA---UGGCC-CU-------CUGGAGCU- -5'
9025 5' -59.2 NC_002512.2 + 54418 0.66 0.876455
Target:  5'- cCUGGAcGGCCUGCUGGGGGAa---GAg -3'
miRNA:   3'- uGGCCU-CUGGAUGGCCCUCUggagCU- -5'
9025 5' -59.2 NC_002512.2 + 183210 0.66 0.876455
Target:  5'- aGCgGGAGAUCga-CGGGAucGACCcCGAg -3'
miRNA:   3'- -UGgCCUCUGGaugGCCCU--CUGGaGCU- -5'
9025 5' -59.2 NC_002512.2 + 67761 0.66 0.875776
Target:  5'- aGCCGGGGucgucuCCggcGCCGGGGucgucggugagcuGGCCUCa- -3'
miRNA:   3'- -UGGCCUCu-----GGa--UGGCCCU-------------CUGGAGcu -5'
9025 5' -59.2 NC_002512.2 + 45621 0.66 0.874411
Target:  5'- uGCCGGAGACgCccgacagcuugacgUACgagGGGAGGCC-CGAc -3'
miRNA:   3'- -UGGCCUCUG-G--------------AUGg--CCCUCUGGaGCU- -5'
9025 5' -59.2 NC_002512.2 + 108558 0.66 0.869572
Target:  5'- cGCCGGAGcgaggucaccguGCCgaucuuuuUCGGGGGGCCcCGGg -3'
miRNA:   3'- -UGGCCUC------------UGGau------GGCCCUCUGGaGCU- -5'
9025 5' -59.2 NC_002512.2 + 124786 0.66 0.869572
Target:  5'- uGCCGG-GACC--CgGGGAGACacgUCGAc -3'
miRNA:   3'- -UGGCCuCUGGauGgCCCUCUGg--AGCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.