Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9030 | 3' | -59.4 | NC_002512.2 | + | 154460 | 0.74 | 0.378984 |
Target: 5'- cCCGAUCCGGA-CGuCCCGCCcUCGAg- -3' miRNA: 3'- uGGUUAGGCCUcGC-GGGCGG-AGCUaa -5' |
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9030 | 3' | -59.4 | NC_002512.2 | + | 154320 | 0.72 | 0.499726 |
Target: 5'- gACCGggAUCCGGAGuCGUCCGCgUCGu-- -3' miRNA: 3'- -UGGU--UAGGCCUC-GCGGGCGgAGCuaa -5' |
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9030 | 3' | -59.4 | NC_002512.2 | + | 153778 | 0.67 | 0.803887 |
Target: 5'- cACCAccCCGGcGCcCCCGCCUCa--- -3' miRNA: 3'- -UGGUuaGGCCuCGcGGGCGGAGcuaa -5' |
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9030 | 3' | -59.4 | NC_002512.2 | + | 153009 | 0.68 | 0.731646 |
Target: 5'- aACCAuuucguGUCCGGGaggauggucGCGCCCuaCUCGAa- -3' miRNA: 3'- -UGGU------UAGGCCU---------CGCGGGcgGAGCUaa -5' |
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9030 | 3' | -59.4 | NC_002512.2 | + | 152062 | 0.67 | 0.811513 |
Target: 5'- gACCGGUCgCGGucaucgccguccuAGCGCCCGCgUCc--- -3' miRNA: 3'- -UGGUUAG-GCC-------------UCGCGGGCGgAGcuaa -5' |
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9030 | 3' | -59.4 | NC_002512.2 | + | 149515 | 0.66 | 0.852279 |
Target: 5'- gGCCGcggCCGGAGCggGCCgGCCagGAg- -3' miRNA: 3'- -UGGUua-GGCCUCG--CGGgCGGagCUaa -5' |
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9030 | 3' | -59.4 | NC_002512.2 | + | 146080 | 0.68 | 0.74942 |
Target: 5'- cGCCGccgCCGGcGCGCCCGacgcgguCCUCGGc- -3' miRNA: 3'- -UGGUua-GGCCuCGCGGGC-------GGAGCUaa -5' |
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9030 | 3' | -59.4 | NC_002512.2 | + | 142075 | 0.75 | 0.355763 |
Target: 5'- uCCGA-CCGccGCGCCCGCCUCGAc- -3' miRNA: 3'- uGGUUaGGCcuCGCGGGCGGAGCUaa -5' |
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9030 | 3' | -59.4 | NC_002512.2 | + | 139288 | 0.66 | 0.836817 |
Target: 5'- gGCgAAgg-GGGGCGCCCGCCcCGGg- -3' miRNA: 3'- -UGgUUaggCCUCGCGGGCGGaGCUaa -5' |
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9030 | 3' | -59.4 | NC_002512.2 | + | 137803 | 0.67 | 0.768664 |
Target: 5'- gGCCGcgcGUCCGGcGGcCGUCCGUCUCGu-- -3' miRNA: 3'- -UGGU---UAGGCC-UC-GCGGGCGGAGCuaa -5' |
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9030 | 3' | -59.4 | NC_002512.2 | + | 135339 | 0.68 | 0.758641 |
Target: 5'- aGCCGcgCCGGGGUGCugcuggccgucgaCCGCUUCGu-- -3' miRNA: 3'- -UGGUuaGGCCUCGCG-------------GGCGGAGCuaa -5' |
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9030 | 3' | -59.4 | NC_002512.2 | + | 135209 | 0.72 | 0.506227 |
Target: 5'- cGCCAGcgggCCGGGGgGCCCcccggccccgggccGCCUCGAg- -3' miRNA: 3'- -UGGUUa---GGCCUCgCGGG--------------CGGAGCUaa -5' |
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9030 | 3' | -59.4 | NC_002512.2 | + | 134965 | 0.71 | 0.575872 |
Target: 5'- cGCCGugAUCCGGAGCuGUCUGCCcggCGAc- -3' miRNA: 3'- -UGGU--UAGGCCUCG-CGGGCGGa--GCUaa -5' |
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9030 | 3' | -59.4 | NC_002512.2 | + | 132459 | 0.66 | 0.836817 |
Target: 5'- gGCgGGUCCggGGAGCGCgCGUCUCu--- -3' miRNA: 3'- -UGgUUAGG--CCUCGCGgGCGGAGcuaa -5' |
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9030 | 3' | -59.4 | NC_002512.2 | + | 128382 | 0.66 | 0.844637 |
Target: 5'- cCCGucgCCGGcGGCGgacCCCGUCUCGAg- -3' miRNA: 3'- uGGUua-GGCC-UCGC---GGGCGGAGCUaa -5' |
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9030 | 3' | -59.4 | NC_002512.2 | + | 128131 | 0.68 | 0.759557 |
Target: 5'- cGCCGA--CGGAGCGCCCGggccaccaCCUCGc-- -3' miRNA: 3'- -UGGUUagGCCUCGCGGGC--------GGAGCuaa -5' |
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9030 | 3' | -59.4 | NC_002512.2 | + | 128089 | 0.66 | 0.820668 |
Target: 5'- aGCCuccUCGGaAGCGCuCCGCCgUCGAg- -3' miRNA: 3'- -UGGuuaGGCC-UCGCG-GGCGG-AGCUaa -5' |
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9030 | 3' | -59.4 | NC_002512.2 | + | 127825 | 0.67 | 0.812353 |
Target: 5'- cCCGGcUCCGGgaggucgucggcGGCGUCCGCCgCGAa- -3' miRNA: 3'- uGGUU-AGGCC------------UCGCGGGCGGaGCUaa -5' |
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9030 | 3' | -59.4 | NC_002512.2 | + | 126498 | 0.7 | 0.634657 |
Target: 5'- gGCC---CCGGAGCGCgagCGCCUCGGc- -3' miRNA: 3'- -UGGuuaGGCCUCGCGg--GCGGAGCUaa -5' |
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9030 | 3' | -59.4 | NC_002512.2 | + | 121377 | 0.66 | 0.844637 |
Target: 5'- gGCCGGUCgGGcGCcggGCCCGgCCUCGc-- -3' miRNA: 3'- -UGGUUAGgCCuCG---CGGGC-GGAGCuaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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