Results 21 - 40 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
9031 | 3' | -56.3 | NC_002512.2 | + | 114132 | 0.71 | 0.762743 |
Target: 5'- cACCGGUccgAGGAgCaGCCGGcagAGGACg -3' miRNA: 3'- aUGGCCA---UCCUgGaUGGCCa--UCCUGg -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 113275 | 0.71 | 0.762743 |
Target: 5'- gGCCGGcGGGGCa-GCCGcGgcGGGCCu -3' miRNA: 3'- aUGGCCaUCCUGgaUGGC-CauCCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 157362 | 0.71 | 0.780877 |
Target: 5'- cGCCGaGguccGGGCC-GCCGGgcaGGGACCg -3' miRNA: 3'- aUGGC-Cau--CCUGGaUGGCCa--UCCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 26239 | 0.71 | 0.780877 |
Target: 5'- gACCGGUAuGGACgUGCUGcugGGGACa -3' miRNA: 3'- aUGGCCAU-CCUGgAUGGCca-UCCUGg -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 225981 | 0.71 | 0.744176 |
Target: 5'- gACCGGUcucgggggcaagGGGACCgggacGCCGGUgcugacuccgAGGACg -3' miRNA: 3'- aUGGCCA------------UCCUGGa----UGGCCA----------UCCUGg -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 76230 | 0.71 | 0.744176 |
Target: 5'- cUACCGGUAGGuuCCUAuaGGUAGGu-- -3' miRNA: 3'- -AUGGCCAUCCu-GGAUggCCAUCCugg -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 227968 | 0.71 | 0.762743 |
Target: 5'- aGCCGGagaggAGGGCC--CCGGcgccgAGGGCCg -3' miRNA: 3'- aUGGCCa----UCCUGGauGGCCa----UCCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 72779 | 0.71 | 0.762743 |
Target: 5'- cGCCGGgaGGGACgUcGCCGGgacGGGCCc -3' miRNA: 3'- aUGGCCa-UCCUGgA-UGGCCau-CCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 135217 | 0.71 | 0.780877 |
Target: 5'- gGCCGG-GGGGCCccCCGGccccGGGCCg -3' miRNA: 3'- aUGGCCaUCCUGGauGGCCau--CCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 108509 | 0.7 | 0.789762 |
Target: 5'- gGCCGGgcccGGcGCCcgACCGGccgGGGACCc -3' miRNA: 3'- aUGGCCau--CC-UGGa-UGGCCa--UCCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 119562 | 0.7 | 0.815586 |
Target: 5'- gACCGGgcGGACCgcgggagcCCGGcGGGuCCc -3' miRNA: 3'- aUGGCCauCCUGGau------GGCCaUCCuGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 167737 | 0.7 | 0.823893 |
Target: 5'- aGCgGGgcgAGGAgCUGCCGGgcgucGGcGACCg -3' miRNA: 3'- aUGgCCa--UCCUgGAUGGCCa----UC-CUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 123728 | 0.7 | 0.798513 |
Target: 5'- gACCuGUGcucGGACCUGCgGGgucGGACCu -3' miRNA: 3'- aUGGcCAU---CCUGGAUGgCCau-CCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 201849 | 0.7 | 0.807124 |
Target: 5'- gGCCGGcagcucgccUGGGGCCUG-CGGUccgAGGACg -3' miRNA: 3'- aUGGCC---------AUCCUGGAUgGCCA---UCCUGg -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 149127 | 0.7 | 0.815586 |
Target: 5'- aGCCGcG-AGGACCc-CCGGgacccGGGACCg -3' miRNA: 3'- aUGGC-CaUCCUGGauGGCCa----UCCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 132012 | 0.7 | 0.823069 |
Target: 5'- cGCCGGgGGGACCUcggcggcgacgucGUCGGccaGGGACCg -3' miRNA: 3'- aUGGCCaUCCUGGA-------------UGGCCa--UCCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 130679 | 0.69 | 0.832036 |
Target: 5'- gACCGGgacGGGCUgcuCgUGGUGGGGCCc -3' miRNA: 3'- aUGGCCau-CCUGGau-G-GCCAUCCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 40220 | 0.69 | 0.853157 |
Target: 5'- gUACCaGUAGGGCCgacGCCGGUGucGGcgcgucccgacgaaGCCg -3' miRNA: 3'- -AUGGcCAUCCUGGa--UGGCCAU--CC--------------UGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 69936 | 0.69 | 0.862847 |
Target: 5'- -cCCGGUAGG-UCU-CCGGUccGGCCa -3' miRNA: 3'- auGGCCAUCCuGGAuGGCCAucCUGG- -5' |
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9031 | 3' | -56.3 | NC_002512.2 | + | 169203 | 0.69 | 0.854668 |
Target: 5'- aGCCaagugugGGaGGGACCUGCUcugugGGUGGGAgCCa -3' miRNA: 3'- aUGG-------CCaUCCUGGAUGG-----CCAUCCU-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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