miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9031 3' -56.3 NC_002512.2 + 169377 0.69 0.855421
Target:  5'- aGCCaagugGGaGGGGCCUGCUcugugGGUGGGAgCCa -3'
miRNA:   3'- aUGG-----CCaUCCUGGAUGG-----CCAUCCU-GG- -5'
9031 3' -56.3 NC_002512.2 + 169273 0.69 0.854668
Target:  5'- aGCCaagugugGGaGGGACCUGCUcugugGGUGGGAgCCa -3'
miRNA:   3'- aUGG-------CCaUCCUGGAUGG-----CCAUCCU-GG- -5'
9031 3' -56.3 NC_002512.2 + 169203 0.69 0.854668
Target:  5'- aGCCaagugugGGaGGGACCUGCUcugugGGUGGGAgCCa -3'
miRNA:   3'- aUGG-------CCaUCCUGGAUGG-----CCAUCCU-GG- -5'
9031 3' -56.3 NC_002512.2 + 167737 0.7 0.823893
Target:  5'- aGCgGGgcgAGGAgCUGCCGGgcgucGGcGACCg -3'
miRNA:   3'- aUGgCCa--UCCUgGAUGGCCa----UC-CUGG- -5'
9031 3' -56.3 NC_002512.2 + 166462 0.67 0.914875
Target:  5'- cGCCGGgcucgAGGGCggggaCGGcGGGACCg -3'
miRNA:   3'- aUGGCCa----UCCUGgaug-GCCaUCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 159951 0.74 0.607606
Target:  5'- gGCCGGaccGGaGACCUACCGGga-GACCu -3'
miRNA:   3'- aUGGCCa--UC-CUGGAUGGCCaucCUGG- -5'
9031 3' -56.3 NC_002512.2 + 158545 0.84 0.174155
Target:  5'- gGCUGGU-GGACCUGCUGGUGGG-CCg -3'
miRNA:   3'- aUGGCCAuCCUGGAUGGCCAUCCuGG- -5'
9031 3' -56.3 NC_002512.2 + 158287 0.66 0.952883
Target:  5'- aGCUGG-AGGGCgUGCCGGcccccaAGG-CCg -3'
miRNA:   3'- aUGGCCaUCCUGgAUGGCCa-----UCCuGG- -5'
9031 3' -56.3 NC_002512.2 + 157362 0.71 0.780877
Target:  5'- cGCCGaGguccGGGCC-GCCGGgcaGGGACCg -3'
miRNA:   3'- aUGGC-Cau--CCUGGaUGGCCa--UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 156439 0.67 0.935654
Target:  5'- gGCCGGgcugGGGGgCU-CCGGgggcggcggGGGACUc -3'
miRNA:   3'- aUGGCCa---UCCUgGAuGGCCa--------UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 153657 0.79 0.333929
Target:  5'- cUACCuaUAGGaACCUACCGGUAGGuACCu -3'
miRNA:   3'- -AUGGccAUCC-UGGAUGGCCAUCC-UGG- -5'
9031 3' -56.3 NC_002512.2 + 153631 1.1 0.004078
Target:  5'- cUACCGGUAGGACCUACCGGUAGGACCu -3'
miRNA:   3'- -AUGGCCAUCCUGGAUGGCCAUCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 151884 0.67 0.914875
Target:  5'- cGCCGGcgauccgcGGAUCguuuCCGGUAGGcauGCCg -3'
miRNA:   3'- aUGGCCau------CCUGGau--GGCCAUCC---UGG- -5'
9031 3' -56.3 NC_002512.2 + 149500 0.66 0.940291
Target:  5'- gGCgGGUGGucaaaaGGCCgcgGCCGGagcGGGCCg -3'
miRNA:   3'- aUGgCCAUC------CUGGa--UGGCCau-CCUGG- -5'
9031 3' -56.3 NC_002512.2 + 149127 0.7 0.815586
Target:  5'- aGCCGcG-AGGACCc-CCGGgacccGGGACCg -3'
miRNA:   3'- aUGGC-CaUCCUGGauGGCCa----UCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 149005 0.69 0.832036
Target:  5'- gGCCGG-GGGGCC-GCCGc--GGACCg -3'
miRNA:   3'- aUGGCCaUCCUGGaUGGCcauCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 148435 0.67 0.914875
Target:  5'- cGCCGGgggAGGACggggGCCGGgccccccgcGGGACg -3'
miRNA:   3'- aUGGCCa--UCCUGga--UGGCCa--------UCCUGg -5'
9031 3' -56.3 NC_002512.2 + 143684 0.69 0.855421
Target:  5'- aGCCGGgcgGGGugUcggGCaCGG-AGGGCCg -3'
miRNA:   3'- aUGGCCa--UCCugGa--UG-GCCaUCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 142031 0.67 0.925711
Target:  5'- gGCCGGgggccGGcGACCcGCCGcG-AGGGCCc -3'
miRNA:   3'- aUGGCCa----UC-CUGGaUGGC-CaUCCUGG- -5'
9031 3' -56.3 NC_002512.2 + 139803 0.67 0.914875
Target:  5'- gGCCGGcgGGGGCCUcgguCgGGUguccaAGGACg -3'
miRNA:   3'- aUGGCCa-UCCUGGAu---GgCCA-----UCCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.