miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9031 5' -49.4 NC_002512.2 + 153665 1.15 0.009568
Target:  5'- aGGAACCUACCGGUAGGUACCUAUAGCc -3'
miRNA:   3'- -CCUUGGAUGGCCAUCCAUGGAUAUCG- -5'
9031 5' -49.4 NC_002512.2 + 76224 0.91 0.221593
Target:  5'- aGGuACCUACCGGUAGGUuCCUAUAGg -3'
miRNA:   3'- -CCuUGGAUGGCCAUCCAuGGAUAUCg -5'
9031 5' -49.4 NC_002512.2 + 153639 0.83 0.557619
Target:  5'- aGGACCUACCGGUAGG-ACCUAc--- -3'
miRNA:   3'- cCUUGGAUGGCCAUCCaUGGAUaucg -5'
9031 5' -49.4 NC_002512.2 + 76265 0.78 0.779874
Target:  5'- aGGu-CCUACCGGUAGGUAU--AUAGUa -3'
miRNA:   3'- -CCuuGGAUGGCCAUCCAUGgaUAUCG- -5'
9031 5' -49.4 NC_002512.2 + 158551 0.78 0.789169
Target:  5'- uGGACCUGCUGGUGGGccgcuCCUGgcGCg -3'
miRNA:   3'- cCUUGGAUGGCCAUCCau---GGAUauCG- -5'
9031 5' -49.4 NC_002512.2 + 108435 0.73 0.95685
Target:  5'- cGGGGCCggggGCCGGgGGGUcCCUccccgGGCg -3'
miRNA:   3'- -CCUUGGa---UGGCCaUCCAuGGAua---UCG- -5'
9031 5' -49.4 NC_002512.2 + 169286 0.72 0.970313
Target:  5'- aGGGACCUGCUcugugGGUGGGaGCCaagUGUGGg -3'
miRNA:   3'- -CCUUGGAUGG-----CCAUCCaUGG---AUAUCg -5'
9031 5' -49.4 NC_002512.2 + 169216 0.72 0.970313
Target:  5'- aGGGACCUGCUcugugGGUGGGaGCCaagUGUGGg -3'
miRNA:   3'- -CCUUGGAUGG-----CCAUCCaUGG---AUAUCg -5'
9031 5' -49.4 NC_002512.2 + 97774 0.72 0.973145
Target:  5'- -cGGCCUACCGGgcGGc-CCUcgAGCc -3'
miRNA:   3'- ccUUGGAUGGCCauCCauGGAuaUCG- -5'
9031 5' -49.4 NC_002512.2 + 158823 0.71 0.982137
Target:  5'- cGAACCUGCgGG-AGGUGCUgacgcgggggAGCg -3'
miRNA:   3'- cCUUGGAUGgCCaUCCAUGGaua-------UCG- -5'
9031 5' -49.4 NC_002512.2 + 169388 0.71 0.982537
Target:  5'- aGGGGCCUGCUcugugGGUGGGaGCCaagUGUGGg -3'
miRNA:   3'- -CCUUGGAUGG-----CCAUCCaUGG---AUAUCg -5'
9031 5' -49.4 NC_002512.2 + 185518 0.7 0.989212
Target:  5'- gGGGGCCUGCCGcucuucgagGGGgugGCCUAccGGCc -3'
miRNA:   3'- -CCUUGGAUGGCca-------UCCa--UGGAUa-UCG- -5'
9031 5' -49.4 NC_002512.2 + 109852 0.7 0.991697
Target:  5'- gGGGACCggcgugGCggCGGUGGGgACCUAccGCg -3'
miRNA:   3'- -CCUUGGa-----UG--GCCAUCCaUGGAUauCG- -5'
9031 5' -49.4 NC_002512.2 + 43138 0.7 0.992757
Target:  5'- gGGAACaUGCCGGgcguGGUGCCcgcgacguUGGCc -3'
miRNA:   3'- -CCUUGgAUGGCCau--CCAUGGau------AUCG- -5'
9031 5' -49.4 NC_002512.2 + 159709 0.69 0.994553
Target:  5'- aGGcACCgggACCGGgagAGGUACUaccGGCg -3'
miRNA:   3'- -CCuUGGa--UGGCCa--UCCAUGGauaUCG- -5'
9031 5' -49.4 NC_002512.2 + 123738 0.69 0.99597
Target:  5'- cGGACCUGCgGGgucGG-ACCUGgcggAGCu -3'
miRNA:   3'- cCUUGGAUGgCCau-CCaUGGAUa---UCG- -5'
9031 5' -49.4 NC_002512.2 + 75683 0.69 0.99597
Target:  5'- aGGGACCUAUCcuaGGUccuacGGGcACCUAgcGCg -3'
miRNA:   3'- -CCUUGGAUGG---CCA-----UCCaUGGAUauCG- -5'
9031 5' -49.4 NC_002512.2 + 52884 0.69 0.99707
Target:  5'- cGGAGCC-ACCuGGUGGGUAUCc----- -3'
miRNA:   3'- -CCUUGGaUGG-CCAUCCAUGGauaucg -5'
9031 5' -49.4 NC_002512.2 + 4423 0.69 0.99707
Target:  5'- cGGcGgCUGCUGGUagaccggcgGGGUGCCg--GGCg -3'
miRNA:   3'- -CCuUgGAUGGCCA---------UCCAUGGauaUCG- -5'
9031 5' -49.4 NC_002512.2 + 66777 0.68 0.997519
Target:  5'- aGGAGCUguuCUGGgcGGU-CCggAUGGCg -3'
miRNA:   3'- -CCUUGGau-GGCCauCCAuGGa-UAUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.