miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9031 5' -49.4 NC_002512.2 + 163401 0.67 0.999327
Target:  5'- cGAAUCUGCCGG--GGUugCUGUuaaccGGUu -3'
miRNA:   3'- cCUUGGAUGGCCauCCAugGAUA-----UCG- -5'
9031 5' -49.4 NC_002512.2 + 43801 0.68 0.997909
Target:  5'- aGGAGCCgACCGGUcucgccgACC-AUGGCg -3'
miRNA:   3'- -CCUUGGaUGGCCAucca---UGGaUAUCG- -5'
9031 5' -49.4 NC_002512.2 + 75732 0.68 0.998246
Target:  5'- aGGGuaccGCCUACCGGaAGGacaguacaACC-AUAGCu -3'
miRNA:   3'- -CCU----UGGAUGGCCaUCCa-------UGGaUAUCG- -5'
9031 5' -49.4 NC_002512.2 + 101851 0.68 0.998785
Target:  5'- cGGGGCCgugcagcucuucgacGCCGGggcGGGUcuguucuGCCUcgGGCg -3'
miRNA:   3'- -CCUUGGa--------------UGGCCa--UCCA-------UGGAuaUCG- -5'
9031 5' -49.4 NC_002512.2 + 108803 0.67 0.999159
Target:  5'- aGGAUCU-CCGcGUGGGUccgcuuccuccgcGCCUcgGGCg -3'
miRNA:   3'- cCUUGGAuGGC-CAUCCA-------------UGGAuaUCG- -5'
9031 5' -49.4 NC_002512.2 + 4198 0.67 0.999176
Target:  5'- aGGAcGCCggagAUCGGUGGGagcgGCCgcggggAGCg -3'
miRNA:   3'- -CCU-UGGa---UGGCCAUCCa---UGGaua---UCG- -5'
9031 5' -49.4 NC_002512.2 + 85305 0.67 0.999176
Target:  5'- gGGAucgacGCCUGCCGcucgacGUAGGUcGCCgguuggAGCu -3'
miRNA:   3'- -CCU-----UGGAUGGC------CAUCCA-UGGaua---UCG- -5'
9031 5' -49.4 NC_002512.2 + 8330 0.67 0.999327
Target:  5'- gGGAGCCggagACCGc-GGGU-CCggcGUAGCg -3'
miRNA:   3'- -CCUUGGa---UGGCcaUCCAuGGa--UAUCG- -5'
9031 5' -49.4 NC_002512.2 + 81297 0.67 0.999327
Target:  5'- cGGGCCUGCgGgGUGGGUuuguugGCCagcUGGCg -3'
miRNA:   3'- cCUUGGAUGgC-CAUCCA------UGGau-AUCG- -5'
9031 5' -49.4 NC_002512.2 + 54420 0.68 0.99776
Target:  5'- uGGAcgGCCUGCUGGgggaagaggacagGGGgACCggcacgGUGGCg -3'
miRNA:   3'- -CCU--UGGAUGGCCa------------UCCaUGGa-----UAUCG- -5'
9031 5' -49.4 NC_002512.2 + 66777 0.68 0.997519
Target:  5'- aGGAGCUguuCUGGgcGGU-CCggAUGGCg -3'
miRNA:   3'- -CCUUGGau-GGCCauCCAuGGa-UAUCG- -5'
9031 5' -49.4 NC_002512.2 + 4423 0.69 0.99707
Target:  5'- cGGcGgCUGCUGGUagaccggcgGGGUGCCg--GGCg -3'
miRNA:   3'- -CCuUgGAUGGCCA---------UCCAUGGauaUCG- -5'
9031 5' -49.4 NC_002512.2 + 76265 0.78 0.779874
Target:  5'- aGGu-CCUACCGGUAGGUAU--AUAGUa -3'
miRNA:   3'- -CCuuGGAUGGCCAUCCAUGgaUAUCG- -5'
9031 5' -49.4 NC_002512.2 + 169216 0.72 0.970313
Target:  5'- aGGGACCUGCUcugugGGUGGGaGCCaagUGUGGg -3'
miRNA:   3'- -CCUUGGAUGG-----CCAUCCaUGG---AUAUCg -5'
9031 5' -49.4 NC_002512.2 + 169286 0.72 0.970313
Target:  5'- aGGGACCUGCUcugugGGUGGGaGCCaagUGUGGg -3'
miRNA:   3'- -CCUUGGAUGG-----CCAUCCaUGG---AUAUCg -5'
9031 5' -49.4 NC_002512.2 + 97774 0.72 0.973145
Target:  5'- -cGGCCUACCGGgcGGc-CCUcgAGCc -3'
miRNA:   3'- ccUUGGAUGGCCauCCauGGAuaUCG- -5'
9031 5' -49.4 NC_002512.2 + 169388 0.71 0.982537
Target:  5'- aGGGGCCUGCUcugugGGUGGGaGCCaagUGUGGg -3'
miRNA:   3'- -CCUUGGAUGG-----CCAUCCaUGG---AUAUCg -5'
9031 5' -49.4 NC_002512.2 + 43138 0.7 0.992757
Target:  5'- gGGAACaUGCCGGgcguGGUGCCcgcgacguUGGCc -3'
miRNA:   3'- -CCUUGgAUGGCCau--CCAUGGau------AUCG- -5'
9031 5' -49.4 NC_002512.2 + 75683 0.69 0.99597
Target:  5'- aGGGACCUAUCcuaGGUccuacGGGcACCUAgcGCg -3'
miRNA:   3'- -CCUUGGAUGG---CCA-----UCCaUGGAUauCG- -5'
9031 5' -49.4 NC_002512.2 + 123738 0.69 0.99597
Target:  5'- cGGACCUGCgGGgucGG-ACCUGgcggAGCu -3'
miRNA:   3'- cCUUGGAUGgCCau-CCaUGGAUa---UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.