Results 21 - 40 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9031 | 5' | -49.4 | NC_002512.2 | + | 8330 | 0.67 | 0.999327 |
Target: 5'- gGGAGCCggagACCGc-GGGU-CCggcGUAGCg -3' miRNA: 3'- -CCUUGGa---UGGCcaUCCAuGGa--UAUCG- -5' |
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9031 | 5' | -49.4 | NC_002512.2 | + | 76224 | 0.91 | 0.221593 |
Target: 5'- aGGuACCUACCGGUAGGUuCCUAUAGg -3' miRNA: 3'- -CCuUGGAUGGCCAUCCAuGGAUAUCg -5' |
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9031 | 5' | -49.4 | NC_002512.2 | + | 169216 | 0.72 | 0.970313 |
Target: 5'- aGGGACCUGCUcugugGGUGGGaGCCaagUGUGGg -3' miRNA: 3'- -CCUUGGAUGG-----CCAUCCaUGG---AUAUCg -5' |
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9031 | 5' | -49.4 | NC_002512.2 | + | 169286 | 0.72 | 0.970313 |
Target: 5'- aGGGACCUGCUcugugGGUGGGaGCCaagUGUGGg -3' miRNA: 3'- -CCUUGGAUGG-----CCAUCCaUGG---AUAUCg -5' |
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9031 | 5' | -49.4 | NC_002512.2 | + | 97774 | 0.72 | 0.973145 |
Target: 5'- -cGGCCUACCGGgcGGc-CCUcgAGCc -3' miRNA: 3'- ccUUGGAUGGCCauCCauGGAuaUCG- -5' |
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9031 | 5' | -49.4 | NC_002512.2 | + | 169388 | 0.71 | 0.982537 |
Target: 5'- aGGGGCCUGCUcugugGGUGGGaGCCaagUGUGGg -3' miRNA: 3'- -CCUUGGAUGG-----CCAUCCaUGG---AUAUCg -5' |
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9031 | 5' | -49.4 | NC_002512.2 | + | 43138 | 0.7 | 0.992757 |
Target: 5'- gGGAACaUGCCGGgcguGGUGCCcgcgacguUGGCc -3' miRNA: 3'- -CCUUGgAUGGCCau--CCAUGGau------AUCG- -5' |
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9031 | 5' | -49.4 | NC_002512.2 | + | 75683 | 0.69 | 0.99597 |
Target: 5'- aGGGACCUAUCcuaGGUccuacGGGcACCUAgcGCg -3' miRNA: 3'- -CCUUGGAUGG---CCA-----UCCaUGGAUauCG- -5' |
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9031 | 5' | -49.4 | NC_002512.2 | + | 123738 | 0.69 | 0.99597 |
Target: 5'- cGGACCUGCgGGgucGG-ACCUGgcggAGCu -3' miRNA: 3'- cCUUGGAUGgCCau-CCaUGGAUa---UCG- -5' |
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9031 | 5' | -49.4 | NC_002512.2 | + | 4423 | 0.69 | 0.99707 |
Target: 5'- cGGcGgCUGCUGGUagaccggcgGGGUGCCg--GGCg -3' miRNA: 3'- -CCuUgGAUGGCCA---------UCCAUGGauaUCG- -5' |
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9031 | 5' | -49.4 | NC_002512.2 | + | 66777 | 0.68 | 0.997519 |
Target: 5'- aGGAGCUguuCUGGgcGGU-CCggAUGGCg -3' miRNA: 3'- -CCUUGGau-GGCCauCCAuGGa-UAUCG- -5' |
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9031 | 5' | -49.4 | NC_002512.2 | + | 54420 | 0.68 | 0.99776 |
Target: 5'- uGGAcgGCCUGCUGGgggaagaggacagGGGgACCggcacgGUGGCg -3' miRNA: 3'- -CCU--UGGAUGGCCa------------UCCaUGGa-----UAUCG- -5' |
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9031 | 5' | -49.4 | NC_002512.2 | + | 43801 | 0.68 | 0.997909 |
Target: 5'- aGGAGCCgACCGGUcucgccgACC-AUGGCg -3' miRNA: 3'- -CCUUGGaUGGCCAucca---UGGaUAUCG- -5' |
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9031 | 5' | -49.4 | NC_002512.2 | + | 75732 | 0.68 | 0.998246 |
Target: 5'- aGGGuaccGCCUACCGGaAGGacaguacaACC-AUAGCu -3' miRNA: 3'- -CCU----UGGAUGGCCaUCCa-------UGGaUAUCG- -5' |
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9031 | 5' | -49.4 | NC_002512.2 | + | 101851 | 0.68 | 0.998785 |
Target: 5'- cGGGGCCgugcagcucuucgacGCCGGggcGGGUcuguucuGCCUcgGGCg -3' miRNA: 3'- -CCUUGGa--------------UGGCCa--UCCA-------UGGAuaUCG- -5' |
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9031 | 5' | -49.4 | NC_002512.2 | + | 108803 | 0.67 | 0.999159 |
Target: 5'- aGGAUCU-CCGcGUGGGUccgcuuccuccgcGCCUcgGGCg -3' miRNA: 3'- cCUUGGAuGGC-CAUCCA-------------UGGAuaUCG- -5' |
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9031 | 5' | -49.4 | NC_002512.2 | + | 4198 | 0.67 | 0.999176 |
Target: 5'- aGGAcGCCggagAUCGGUGGGagcgGCCgcggggAGCg -3' miRNA: 3'- -CCU-UGGa---UGGCCAUCCa---UGGaua---UCG- -5' |
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9031 | 5' | -49.4 | NC_002512.2 | + | 85305 | 0.67 | 0.999176 |
Target: 5'- gGGAucgacGCCUGCCGcucgacGUAGGUcGCCgguuggAGCu -3' miRNA: 3'- -CCU-----UGGAUGGC------CAUCCA-UGGaua---UCG- -5' |
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9031 | 5' | -49.4 | NC_002512.2 | + | 81297 | 0.67 | 0.999327 |
Target: 5'- cGGGCCUGCgGgGUGGGUuuguugGCCagcUGGCg -3' miRNA: 3'- cCUUGGAUGgC-CAUCCA------UGGau-AUCG- -5' |
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9031 | 5' | -49.4 | NC_002512.2 | + | 149149 | 0.66 | 0.999718 |
Target: 5'- cGGGACCgccGCgGGgccGGUGCCgcccgcgGGCc -3' miRNA: 3'- -CCUUGGa--UGgCCau-CCAUGGaua----UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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