miRNA display CGI


Results 21 - 40 of 62 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9031 5' -49.4 NC_002512.2 + 69069 0.66 0.999646
Target:  5'- --cGCCUGCUGGUGccggggcggcuGGUACUgcugccGUGGCu -3'
miRNA:   3'- ccuUGGAUGGCCAU-----------CCAUGGa-----UAUCG- -5'
9031 5' -49.4 NC_002512.2 + 75683 0.69 0.99597
Target:  5'- aGGGACCUAUCcuaGGUccuacGGGcACCUAgcGCg -3'
miRNA:   3'- -CCUUGGAUGG---CCA-----UCCaUGGAUauCG- -5'
9031 5' -49.4 NC_002512.2 + 75732 0.68 0.998246
Target:  5'- aGGGuaccGCCUACCGGaAGGacaguacaACC-AUAGCu -3'
miRNA:   3'- -CCU----UGGAUGGCCaUCCa-------UGGaUAUCG- -5'
9031 5' -49.4 NC_002512.2 + 76224 0.91 0.221593
Target:  5'- aGGuACCUACCGGUAGGUuCCUAUAGg -3'
miRNA:   3'- -CCuUGGAUGGCCAUCCAuGGAUAUCg -5'
9031 5' -49.4 NC_002512.2 + 76265 0.78 0.779874
Target:  5'- aGGu-CCUACCGGUAGGUAU--AUAGUa -3'
miRNA:   3'- -CCuuGGAUGGCCAUCCAUGgaUAUCG- -5'
9031 5' -49.4 NC_002512.2 + 81297 0.67 0.999327
Target:  5'- cGGGCCUGCgGgGUGGGUuuguugGCCagcUGGCg -3'
miRNA:   3'- cCUUGGAUGgC-CAUCCA------UGGau-AUCG- -5'
9031 5' -49.4 NC_002512.2 + 82226 0.67 0.999453
Target:  5'- gGGAAgCgggGCCGGUGacGGUAgCgggAGCg -3'
miRNA:   3'- -CCUUgGa--UGGCCAU--CCAUgGauaUCG- -5'
9031 5' -49.4 NC_002512.2 + 85305 0.67 0.999176
Target:  5'- gGGAucgacGCCUGCCGcucgacGUAGGUcGCCgguuggAGCu -3'
miRNA:   3'- -CCU-----UGGAUGGC------CAUCCA-UGGaua---UCG- -5'
9031 5' -49.4 NC_002512.2 + 97774 0.72 0.973145
Target:  5'- -cGGCCUACCGGgcGGc-CCUcgAGCc -3'
miRNA:   3'- ccUUGGAUGGCCauCCauGGAuaUCG- -5'
9031 5' -49.4 NC_002512.2 + 101851 0.68 0.998785
Target:  5'- cGGGGCCgugcagcucuucgacGCCGGggcGGGUcuguucuGCCUcgGGCg -3'
miRNA:   3'- -CCUUGGa--------------UGGCCa--UCCA-------UGGAuaUCG- -5'
9031 5' -49.4 NC_002512.2 + 103193 0.66 0.999646
Target:  5'- uGAGCCUGcCCGGcgagcggGGGUAUCcgaGGCg -3'
miRNA:   3'- cCUUGGAU-GGCCa------UCCAUGGauaUCG- -5'
9031 5' -49.4 NC_002512.2 + 108435 0.73 0.95685
Target:  5'- cGGGGCCggggGCCGGgGGGUcCCUccccgGGCg -3'
miRNA:   3'- -CCUUGGa---UGGCCaUCCAuGGAua---UCG- -5'
9031 5' -49.4 NC_002512.2 + 108757 0.66 0.999824
Target:  5'- cGGccGCCgucgACgGGUucGGGUACCgaucggAUAGCc -3'
miRNA:   3'- -CCu-UGGa---UGgCCA--UCCAUGGa-----UAUCG- -5'
9031 5' -49.4 NC_002512.2 + 108803 0.67 0.999159
Target:  5'- aGGAUCU-CCGcGUGGGUccgcuuccuccgcGCCUcgGGCg -3'
miRNA:   3'- cCUUGGAuGGC-CAUCCA-------------UGGAuaUCG- -5'
9031 5' -49.4 NC_002512.2 + 109730 0.66 0.999718
Target:  5'- gGGAAgCgcgGCCGGUugcgcGGGU-CCUcgGGUc -3'
miRNA:   3'- -CCUUgGa--UGGCCA-----UCCAuGGAuaUCG- -5'
9031 5' -49.4 NC_002512.2 + 109852 0.7 0.991697
Target:  5'- gGGGACCggcgugGCggCGGUGGGgACCUAccGCg -3'
miRNA:   3'- -CCUUGGa-----UG--GCCAUCCaUGGAUauCG- -5'
9031 5' -49.4 NC_002512.2 + 123738 0.69 0.99597
Target:  5'- cGGACCUGCgGGgucGG-ACCUGgcggAGCu -3'
miRNA:   3'- cCUUGGAUGgCCau-CCaUGGAUa---UCG- -5'
9031 5' -49.4 NC_002512.2 + 125890 0.66 0.999646
Target:  5'- uGGAACCggACCGcGUccaGGGUGCgCgacAGCu -3'
miRNA:   3'- -CCUUGGa-UGGC-CA---UCCAUG-GauaUCG- -5'
9031 5' -49.4 NC_002512.2 + 128581 0.66 0.999754
Target:  5'- gGGGGCCgacccugcgagagGCCGGgacguccGGGUACCUGc--- -3'
miRNA:   3'- -CCUUGGa------------UGGCCa------UCCAUGGAUaucg -5'
9031 5' -49.4 NC_002512.2 + 131346 0.68 0.998536
Target:  5'- cGGAAC--GCCGGgcgAGGUcccaGCCggcgcgGUGGCu -3'
miRNA:   3'- -CCUUGgaUGGCCa--UCCA----UGGa-----UAUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.