Results 21 - 40 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9031 | 5' | -49.4 | NC_002512.2 | + | 54420 | 0.68 | 0.99776 |
Target: 5'- uGGAcgGCCUGCUGGgggaagaggacagGGGgACCggcacgGUGGCg -3' miRNA: 3'- -CCU--UGGAUGGCCa------------UCCaUGGa-----UAUCG- -5' |
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9031 | 5' | -49.4 | NC_002512.2 | + | 43801 | 0.68 | 0.997909 |
Target: 5'- aGGAGCCgACCGGUcucgccgACC-AUGGCg -3' miRNA: 3'- -CCUUGGaUGGCCAucca---UGGaUAUCG- -5' |
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9031 | 5' | -49.4 | NC_002512.2 | + | 75732 | 0.68 | 0.998246 |
Target: 5'- aGGGuaccGCCUACCGGaAGGacaguacaACC-AUAGCu -3' miRNA: 3'- -CCU----UGGAUGGCCaUCCa-------UGGaUAUCG- -5' |
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9031 | 5' | -49.4 | NC_002512.2 | + | 197827 | 0.68 | 0.998536 |
Target: 5'- ---cCCUGCCGG-AGGUGCaucgaggGGCg -3' miRNA: 3'- ccuuGGAUGGCCaUCCAUGgaua---UCG- -5' |
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9031 | 5' | -49.4 | NC_002512.2 | + | 131346 | 0.68 | 0.998536 |
Target: 5'- cGGAAC--GCCGGgcgAGGUcccaGCCggcgcgGUGGCu -3' miRNA: 3'- -CCUUGgaUGGCCa--UCCA----UGGa-----UAUCG- -5' |
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9031 | 5' | -49.4 | NC_002512.2 | + | 48938 | 0.68 | 0.998785 |
Target: 5'- uGGGACCcGgaGGUAGGUggaACCUA-AGUg -3' miRNA: 3'- -CCUUGGaUggCCAUCCA---UGGAUaUCG- -5' |
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9031 | 5' | -49.4 | NC_002512.2 | + | 49053 | 0.68 | 0.998785 |
Target: 5'- uGGGACCcGgaGGUAGGUggaACCUA-AGUg -3' miRNA: 3'- -CCUUGGaUggCCAUCCA---UGGAUaUCG- -5' |
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9031 | 5' | -49.4 | NC_002512.2 | + | 148429 | 0.68 | 0.998785 |
Target: 5'- cGGGACC-GCCGGgggAGGacggggGCCg--GGCc -3' miRNA: 3'- -CCUUGGaUGGCCa--UCCa-----UGGauaUCG- -5' |
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9031 | 5' | -49.4 | NC_002512.2 | + | 49179 | 0.68 | 0.998785 |
Target: 5'- uGGGACCcGgaGGUAGGUggaACCUA-AGUg -3' miRNA: 3'- -CCUUGGaUggCCAUCCA---UGGAUaUCG- -5' |
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9031 | 5' | -49.4 | NC_002512.2 | + | 48824 | 0.68 | 0.998785 |
Target: 5'- uGGGACCcGgaGGUAGGUggaACCUA-AGUg -3' miRNA: 3'- -CCUUGGaUggCCAUCCA---UGGAUaUCG- -5' |
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9031 | 5' | -49.4 | NC_002512.2 | + | 101851 | 0.68 | 0.998785 |
Target: 5'- cGGGGCCgugcagcucuucgacGCCGGggcGGGUcuguucuGCCUcgGGCg -3' miRNA: 3'- -CCUUGGa--------------UGGCCa--UCCA-------UGGAuaUCG- -5' |
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9031 | 5' | -49.4 | NC_002512.2 | + | 132118 | 0.67 | 0.998997 |
Target: 5'- aGGGCCgcCCGGUAGG--CCgcgAGCa -3' miRNA: 3'- cCUUGGauGGCCAUCCauGGauaUCG- -5' |
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9031 | 5' | -49.4 | NC_002512.2 | + | 220315 | 0.67 | 0.998997 |
Target: 5'- gGGGGCCggggGCCGGgcuccgGGGgGCCggacGGCc -3' miRNA: 3'- -CCUUGGa---UGGCCa-----UCCaUGGaua-UCG- -5' |
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9031 | 5' | -49.4 | NC_002512.2 | + | 158681 | 0.67 | 0.998997 |
Target: 5'- cGGAucaugGCCgGCCGGgacggggAGGUGCCcgagGUGGa -3' miRNA: 3'- -CCU-----UGGaUGGCCa------UCCAUGGa---UAUCg -5' |
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9031 | 5' | -49.4 | NC_002512.2 | + | 108803 | 0.67 | 0.999159 |
Target: 5'- aGGAUCU-CCGcGUGGGUccgcuuccuccgcGCCUcgGGCg -3' miRNA: 3'- cCUUGGAuGGC-CAUCCA-------------UGGAuaUCG- -5' |
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9031 | 5' | -49.4 | NC_002512.2 | + | 4198 | 0.67 | 0.999176 |
Target: 5'- aGGAcGCCggagAUCGGUGGGagcgGCCgcggggAGCg -3' miRNA: 3'- -CCU-UGGa---UGGCCAUCCa---UGGaua---UCG- -5' |
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9031 | 5' | -49.4 | NC_002512.2 | + | 162067 | 0.67 | 0.999176 |
Target: 5'- uGAGCCUGCCguguuucgucccGGUGGGggugACCgcugaGGCc -3' miRNA: 3'- cCUUGGAUGG------------CCAUCCa---UGGaua--UCG- -5' |
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9031 | 5' | -49.4 | NC_002512.2 | + | 40529 | 0.67 | 0.999176 |
Target: 5'- cGAACCggcgUACCGGgauggGGGUGCCa----- -3' miRNA: 3'- cCUUGG----AUGGCCa----UCCAUGGauaucg -5' |
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9031 | 5' | -49.4 | NC_002512.2 | + | 85305 | 0.67 | 0.999176 |
Target: 5'- gGGAucgacGCCUGCCGcucgacGUAGGUcGCCgguuggAGCu -3' miRNA: 3'- -CCU-----UGGAUGGC------CAUCCA-UGGaua---UCG- -5' |
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9031 | 5' | -49.4 | NC_002512.2 | + | 81297 | 0.67 | 0.999327 |
Target: 5'- cGGGCCUGCgGgGUGGGUuuguugGCCagcUGGCg -3' miRNA: 3'- cCUUGGAUGgC-CAUCCA------UGGau-AUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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