miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9031 5' -49.4 NC_002512.2 + 163401 0.67 0.999327
Target:  5'- cGAAUCUGCCGG--GGUugCUGUuaaccGGUu -3'
miRNA:   3'- cCUUGGAUGGCCauCCAugGAUA-----UCG- -5'
9031 5' -49.4 NC_002512.2 + 81297 0.67 0.999327
Target:  5'- cGGGCCUGCgGgGUGGGUuuguugGCCagcUGGCg -3'
miRNA:   3'- cCUUGGAUGgC-CAUCCA------UGGau-AUCG- -5'
9031 5' -49.4 NC_002512.2 + 8330 0.67 0.999327
Target:  5'- gGGAGCCggagACCGc-GGGU-CCggcGUAGCg -3'
miRNA:   3'- -CCUUGGa---UGGCcaUCCAuGGa--UAUCG- -5'
9031 5' -49.4 NC_002512.2 + 162067 0.67 0.999176
Target:  5'- uGAGCCUGCCguguuucgucccGGUGGGggugACCgcugaGGCc -3'
miRNA:   3'- cCUUGGAUGG------------CCAUCCa---UGGaua--UCG- -5'
9031 5' -49.4 NC_002512.2 + 40529 0.67 0.999176
Target:  5'- cGAACCggcgUACCGGgauggGGGUGCCa----- -3'
miRNA:   3'- cCUUGG----AUGGCCa----UCCAUGGauaucg -5'
9031 5' -49.4 NC_002512.2 + 85305 0.67 0.999176
Target:  5'- gGGAucgacGCCUGCCGcucgacGUAGGUcGCCgguuggAGCu -3'
miRNA:   3'- -CCU-----UGGAUGGC------CAUCCA-UGGaua---UCG- -5'
9031 5' -49.4 NC_002512.2 + 4198 0.67 0.999176
Target:  5'- aGGAcGCCggagAUCGGUGGGagcgGCCgcggggAGCg -3'
miRNA:   3'- -CCU-UGGa---UGGCCAUCCa---UGGaua---UCG- -5'
9031 5' -49.4 NC_002512.2 + 108803 0.67 0.999159
Target:  5'- aGGAUCU-CCGcGUGGGUccgcuuccuccgcGCCUcgGGCg -3'
miRNA:   3'- cCUUGGAuGGC-CAUCCA-------------UGGAuaUCG- -5'
9031 5' -49.4 NC_002512.2 + 220315 0.67 0.998997
Target:  5'- gGGGGCCggggGCCGGgcuccgGGGgGCCggacGGCc -3'
miRNA:   3'- -CCUUGGa---UGGCCa-----UCCaUGGaua-UCG- -5'
9031 5' -49.4 NC_002512.2 + 158681 0.67 0.998997
Target:  5'- cGGAucaugGCCgGCCGGgacggggAGGUGCCcgagGUGGa -3'
miRNA:   3'- -CCU-----UGGaUGGCCa------UCCAUGGa---UAUCg -5'
9031 5' -49.4 NC_002512.2 + 132118 0.67 0.998997
Target:  5'- aGGGCCgcCCGGUAGG--CCgcgAGCa -3'
miRNA:   3'- cCUUGGauGGCCAUCCauGGauaUCG- -5'
9031 5' -49.4 NC_002512.2 + 148429 0.68 0.998785
Target:  5'- cGGGACC-GCCGGgggAGGacggggGCCg--GGCc -3'
miRNA:   3'- -CCUUGGaUGGCCa--UCCa-----UGGauaUCG- -5'
9031 5' -49.4 NC_002512.2 + 49179 0.68 0.998785
Target:  5'- uGGGACCcGgaGGUAGGUggaACCUA-AGUg -3'
miRNA:   3'- -CCUUGGaUggCCAUCCA---UGGAUaUCG- -5'
9031 5' -49.4 NC_002512.2 + 49053 0.68 0.998785
Target:  5'- uGGGACCcGgaGGUAGGUggaACCUA-AGUg -3'
miRNA:   3'- -CCUUGGaUggCCAUCCA---UGGAUaUCG- -5'
9031 5' -49.4 NC_002512.2 + 48938 0.68 0.998785
Target:  5'- uGGGACCcGgaGGUAGGUggaACCUA-AGUg -3'
miRNA:   3'- -CCUUGGaUggCCAUCCA---UGGAUaUCG- -5'
9031 5' -49.4 NC_002512.2 + 101851 0.68 0.998785
Target:  5'- cGGGGCCgugcagcucuucgacGCCGGggcGGGUcuguucuGCCUcgGGCg -3'
miRNA:   3'- -CCUUGGa--------------UGGCCa--UCCA-------UGGAuaUCG- -5'
9031 5' -49.4 NC_002512.2 + 48824 0.68 0.998785
Target:  5'- uGGGACCcGgaGGUAGGUggaACCUA-AGUg -3'
miRNA:   3'- -CCUUGGaUggCCAUCCA---UGGAUaUCG- -5'
9031 5' -49.4 NC_002512.2 + 197827 0.68 0.998536
Target:  5'- ---cCCUGCCGG-AGGUGCaucgaggGGCg -3'
miRNA:   3'- ccuuGGAUGGCCaUCCAUGgaua---UCG- -5'
9031 5' -49.4 NC_002512.2 + 131346 0.68 0.998536
Target:  5'- cGGAAC--GCCGGgcgAGGUcccaGCCggcgcgGUGGCu -3'
miRNA:   3'- -CCUUGgaUGGCCa--UCCA----UGGa-----UAUCG- -5'
9031 5' -49.4 NC_002512.2 + 75732 0.68 0.998246
Target:  5'- aGGGuaccGCCUACCGGaAGGacaguacaACC-AUAGCu -3'
miRNA:   3'- -CCU----UGGAUGGCCaUCCa-------UGGaUAUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.