miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9031 5' -49.4 NC_002512.2 + 4198 0.67 0.999176
Target:  5'- aGGAcGCCggagAUCGGUGGGagcgGCCgcggggAGCg -3'
miRNA:   3'- -CCU-UGGa---UGGCCAUCCa---UGGaua---UCG- -5'
9031 5' -49.4 NC_002512.2 + 4423 0.69 0.99707
Target:  5'- cGGcGgCUGCUGGUagaccggcgGGGUGCCg--GGCg -3'
miRNA:   3'- -CCuUgGAUGGCCA---------UCCAUGGauaUCG- -5'
9031 5' -49.4 NC_002512.2 + 4785 0.67 0.999453
Target:  5'- cGAGCUgcGCCGGUugcgacGGUugCUGcGGCa -3'
miRNA:   3'- cCUUGGa-UGGCCAu-----CCAugGAUaUCG- -5'
9031 5' -49.4 NC_002512.2 + 7755 0.66 0.999776
Target:  5'- cGGAGCCggGgCGGUAGucgGCCgcggagAUGGUg -3'
miRNA:   3'- -CCUUGGa-UgGCCAUCca-UGGa-----UAUCG- -5'
9031 5' -49.4 NC_002512.2 + 8330 0.67 0.999327
Target:  5'- gGGAGCCggagACCGc-GGGU-CCggcGUAGCg -3'
miRNA:   3'- -CCUUGGa---UGGCcaUCCAuGGa--UAUCG- -5'
9031 5' -49.4 NC_002512.2 + 40529 0.67 0.999176
Target:  5'- cGAACCggcgUACCGGgauggGGGUGCCa----- -3'
miRNA:   3'- cCUUGG----AUGGCCa----UCCAUGGauaucg -5'
9031 5' -49.4 NC_002512.2 + 43138 0.7 0.992757
Target:  5'- gGGAACaUGCCGGgcguGGUGCCcgcgacguUGGCc -3'
miRNA:   3'- -CCUUGgAUGGCCau--CCAUGGau------AUCG- -5'
9031 5' -49.4 NC_002512.2 + 43801 0.68 0.997909
Target:  5'- aGGAGCCgACCGGUcucgccgACC-AUGGCg -3'
miRNA:   3'- -CCUUGGaUGGCCAucca---UGGaUAUCG- -5'
9031 5' -49.4 NC_002512.2 + 48726 0.66 0.999776
Target:  5'- --uACCUGCUGG-AGG-ACCUGgccGCg -3'
miRNA:   3'- ccuUGGAUGGCCaUCCaUGGAUau-CG- -5'
9031 5' -49.4 NC_002512.2 + 48824 0.68 0.998785
Target:  5'- uGGGACCcGgaGGUAGGUggaACCUA-AGUg -3'
miRNA:   3'- -CCUUGGaUggCCAUCCA---UGGAUaUCG- -5'
9031 5' -49.4 NC_002512.2 + 48938 0.68 0.998785
Target:  5'- uGGGACCcGgaGGUAGGUggaACCUA-AGUg -3'
miRNA:   3'- -CCUUGGaUggCCAUCCA---UGGAUaUCG- -5'
9031 5' -49.4 NC_002512.2 + 49053 0.68 0.998785
Target:  5'- uGGGACCcGgaGGUAGGUggaACCUA-AGUg -3'
miRNA:   3'- -CCUUGGaUggCCAUCCA---UGGAUaUCG- -5'
9031 5' -49.4 NC_002512.2 + 49179 0.68 0.998785
Target:  5'- uGGGACCcGgaGGUAGGUggaACCUA-AGUg -3'
miRNA:   3'- -CCUUGGaUggCCAUCCA---UGGAUaUCG- -5'
9031 5' -49.4 NC_002512.2 + 50521 0.66 0.999646
Target:  5'- uGGACCUGCUGGUGGaGaGCaug-AGCc -3'
miRNA:   3'- cCUUGGAUGGCCAUC-CaUGgauaUCG- -5'
9031 5' -49.4 NC_002512.2 + 52884 0.69 0.99707
Target:  5'- cGGAGCC-ACCuGGUGGGUAUCc----- -3'
miRNA:   3'- -CCUUGGaUGG-CCAUCCAUGGauaucg -5'
9031 5' -49.4 NC_002512.2 + 54420 0.68 0.99776
Target:  5'- uGGAcgGCCUGCUGGgggaagaggacagGGGgACCggcacgGUGGCg -3'
miRNA:   3'- -CCU--UGGAUGGCCa------------UCCaUGGa-----UAUCG- -5'
9031 5' -49.4 NC_002512.2 + 60272 0.67 0.999341
Target:  5'- uGGACCUGCCGGccgaccugaagaacaAGG-ACCUGUcgucguaccuGGCg -3'
miRNA:   3'- cCUUGGAUGGCCa--------------UCCaUGGAUA----------UCG- -5'
9031 5' -49.4 NC_002512.2 + 61448 0.67 0.999453
Target:  5'- aGAuCCUGCUGGUGGcccgggaccuGUACCgggugAGCa -3'
miRNA:   3'- cCUuGGAUGGCCAUC----------CAUGGaua--UCG- -5'
9031 5' -49.4 NC_002512.2 + 62184 0.66 0.999824
Target:  5'- cGGuaGACC-GCCaggugaGGUAGGUucuucuGCUUGUAGCg -3'
miRNA:   3'- -CC--UUGGaUGG------CCAUCCA------UGGAUAUCG- -5'
9031 5' -49.4 NC_002512.2 + 66777 0.68 0.997519
Target:  5'- aGGAGCUguuCUGGgcGGU-CCggAUGGCg -3'
miRNA:   3'- -CCUUGGau-GGCCauCCAuGGa-UAUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.