Results 1 - 20 of 62 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9031 | 5' | -49.4 | NC_002512.2 | + | 220315 | 0.67 | 0.998997 |
Target: 5'- gGGGGCCggggGCCGGgcuccgGGGgGCCggacGGCc -3' miRNA: 3'- -CCUUGGa---UGGCCa-----UCCaUGGaua-UCG- -5' |
|||||||
9031 | 5' | -49.4 | NC_002512.2 | + | 197827 | 0.68 | 0.998536 |
Target: 5'- ---cCCUGCCGG-AGGUGCaucgaggGGCg -3' miRNA: 3'- ccuuGGAUGGCCaUCCAUGgaua---UCG- -5' |
|||||||
9031 | 5' | -49.4 | NC_002512.2 | + | 185518 | 0.7 | 0.989212 |
Target: 5'- gGGGGCCUGCCGcucuucgagGGGgugGCCUAccGGCc -3' miRNA: 3'- -CCUUGGAUGGCca-------UCCa--UGGAUa-UCG- -5' |
|||||||
9031 | 5' | -49.4 | NC_002512.2 | + | 169388 | 0.71 | 0.982537 |
Target: 5'- aGGGGCCUGCUcugugGGUGGGaGCCaagUGUGGg -3' miRNA: 3'- -CCUUGGAUGG-----CCAUCCaUGG---AUAUCg -5' |
|||||||
9031 | 5' | -49.4 | NC_002512.2 | + | 169286 | 0.72 | 0.970313 |
Target: 5'- aGGGACCUGCUcugugGGUGGGaGCCaagUGUGGg -3' miRNA: 3'- -CCUUGGAUGG-----CCAUCCaUGG---AUAUCg -5' |
|||||||
9031 | 5' | -49.4 | NC_002512.2 | + | 169251 | 0.67 | 0.999453 |
Target: 5'- aGGGGCCUGuCCuGUGGGUgggaGCCaagUGUGGg -3' miRNA: 3'- -CCUUGGAU-GGcCAUCCA----UGG---AUAUCg -5' |
|||||||
9031 | 5' | -49.4 | NC_002512.2 | + | 169216 | 0.72 | 0.970313 |
Target: 5'- aGGGACCUGCUcugugGGUGGGaGCCaagUGUGGg -3' miRNA: 3'- -CCUUGGAUGG-----CCAUCCaUGG---AUAUCg -5' |
|||||||
9031 | 5' | -49.4 | NC_002512.2 | + | 169181 | 0.67 | 0.999453 |
Target: 5'- aGGGGCCUGuCCuGUGGGUgggaGCCaagUGUGGg -3' miRNA: 3'- -CCUUGGAU-GGcCAUCCA----UGG---AUAUCg -5' |
|||||||
9031 | 5' | -49.4 | NC_002512.2 | + | 163401 | 0.67 | 0.999327 |
Target: 5'- cGAAUCUGCCGG--GGUugCUGUuaaccGGUu -3' miRNA: 3'- cCUUGGAUGGCCauCCAugGAUA-----UCG- -5' |
|||||||
9031 | 5' | -49.4 | NC_002512.2 | + | 162067 | 0.67 | 0.999176 |
Target: 5'- uGAGCCUGCCguguuucgucccGGUGGGggugACCgcugaGGCc -3' miRNA: 3'- cCUUGGAUGG------------CCAUCCa---UGGaua--UCG- -5' |
|||||||
9031 | 5' | -49.4 | NC_002512.2 | + | 159709 | 0.69 | 0.994553 |
Target: 5'- aGGcACCgggACCGGgagAGGUACUaccGGCg -3' miRNA: 3'- -CCuUGGa--UGGCCa--UCCAUGGauaUCG- -5' |
|||||||
9031 | 5' | -49.4 | NC_002512.2 | + | 158823 | 0.71 | 0.982137 |
Target: 5'- cGAACCUGCgGG-AGGUGCUgacgcgggggAGCg -3' miRNA: 3'- cCUUGGAUGgCCaUCCAUGGaua-------UCG- -5' |
|||||||
9031 | 5' | -49.4 | NC_002512.2 | + | 158681 | 0.67 | 0.998997 |
Target: 5'- cGGAucaugGCCgGCCGGgacggggAGGUGCCcgagGUGGa -3' miRNA: 3'- -CCU-----UGGaUGGCCa------UCCAUGGa---UAUCg -5' |
|||||||
9031 | 5' | -49.4 | NC_002512.2 | + | 158551 | 0.78 | 0.789169 |
Target: 5'- uGGACCUGCUGGUGGGccgcuCCUGgcGCg -3' miRNA: 3'- cCUUGGAUGGCCAUCCau---GGAUauCG- -5' |
|||||||
9031 | 5' | -49.4 | NC_002512.2 | + | 155292 | 0.66 | 0.999824 |
Target: 5'- cGAGCCga-CGG-AGGgccccgGCCUcgAGCa -3' miRNA: 3'- cCUUGGaugGCCaUCCa-----UGGAuaUCG- -5' |
|||||||
9031 | 5' | -49.4 | NC_002512.2 | + | 154157 | 0.66 | 0.999646 |
Target: 5'- ---uCCUuCCGGUAggcGGUAcCCUGUGGUu -3' miRNA: 3'- ccuuGGAuGGCCAU---CCAU-GGAUAUCG- -5' |
|||||||
9031 | 5' | -49.4 | NC_002512.2 | + | 153665 | 1.15 | 0.009568 |
Target: 5'- aGGAACCUACCGGUAGGUACCUAUAGCc -3' miRNA: 3'- -CCUUGGAUGGCCAUCCAUGGAUAUCG- -5' |
|||||||
9031 | 5' | -49.4 | NC_002512.2 | + | 153639 | 0.83 | 0.557619 |
Target: 5'- aGGACCUACCGGUAGG-ACCUAc--- -3' miRNA: 3'- cCUUGGAUGGCCAUCCaUGGAUaucg -5' |
|||||||
9031 | 5' | -49.4 | NC_002512.2 | + | 149149 | 0.66 | 0.999718 |
Target: 5'- cGGGACCgccGCgGGgccGGUGCCgcccgcgGGCc -3' miRNA: 3'- -CCUUGGa--UGgCCau-CCAUGGaua----UCG- -5' |
|||||||
9031 | 5' | -49.4 | NC_002512.2 | + | 148429 | 0.68 | 0.998785 |
Target: 5'- cGGGACC-GCCGGgggAGGacggggGCCg--GGCc -3' miRNA: 3'- -CCUUGGaUGGCCa--UCCa-----UGGauaUCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home