miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9031 5' -49.4 NC_002512.2 + 220315 0.67 0.998997
Target:  5'- gGGGGCCggggGCCGGgcuccgGGGgGCCggacGGCc -3'
miRNA:   3'- -CCUUGGa---UGGCCa-----UCCaUGGaua-UCG- -5'
9031 5' -49.4 NC_002512.2 + 197827 0.68 0.998536
Target:  5'- ---cCCUGCCGG-AGGUGCaucgaggGGCg -3'
miRNA:   3'- ccuuGGAUGGCCaUCCAUGgaua---UCG- -5'
9031 5' -49.4 NC_002512.2 + 185518 0.7 0.989212
Target:  5'- gGGGGCCUGCCGcucuucgagGGGgugGCCUAccGGCc -3'
miRNA:   3'- -CCUUGGAUGGCca-------UCCa--UGGAUa-UCG- -5'
9031 5' -49.4 NC_002512.2 + 169388 0.71 0.982537
Target:  5'- aGGGGCCUGCUcugugGGUGGGaGCCaagUGUGGg -3'
miRNA:   3'- -CCUUGGAUGG-----CCAUCCaUGG---AUAUCg -5'
9031 5' -49.4 NC_002512.2 + 169286 0.72 0.970313
Target:  5'- aGGGACCUGCUcugugGGUGGGaGCCaagUGUGGg -3'
miRNA:   3'- -CCUUGGAUGG-----CCAUCCaUGG---AUAUCg -5'
9031 5' -49.4 NC_002512.2 + 169251 0.67 0.999453
Target:  5'- aGGGGCCUGuCCuGUGGGUgggaGCCaagUGUGGg -3'
miRNA:   3'- -CCUUGGAU-GGcCAUCCA----UGG---AUAUCg -5'
9031 5' -49.4 NC_002512.2 + 169216 0.72 0.970313
Target:  5'- aGGGACCUGCUcugugGGUGGGaGCCaagUGUGGg -3'
miRNA:   3'- -CCUUGGAUGG-----CCAUCCaUGG---AUAUCg -5'
9031 5' -49.4 NC_002512.2 + 169181 0.67 0.999453
Target:  5'- aGGGGCCUGuCCuGUGGGUgggaGCCaagUGUGGg -3'
miRNA:   3'- -CCUUGGAU-GGcCAUCCA----UGG---AUAUCg -5'
9031 5' -49.4 NC_002512.2 + 163401 0.67 0.999327
Target:  5'- cGAAUCUGCCGG--GGUugCUGUuaaccGGUu -3'
miRNA:   3'- cCUUGGAUGGCCauCCAugGAUA-----UCG- -5'
9031 5' -49.4 NC_002512.2 + 162067 0.67 0.999176
Target:  5'- uGAGCCUGCCguguuucgucccGGUGGGggugACCgcugaGGCc -3'
miRNA:   3'- cCUUGGAUGG------------CCAUCCa---UGGaua--UCG- -5'
9031 5' -49.4 NC_002512.2 + 159709 0.69 0.994553
Target:  5'- aGGcACCgggACCGGgagAGGUACUaccGGCg -3'
miRNA:   3'- -CCuUGGa--UGGCCa--UCCAUGGauaUCG- -5'
9031 5' -49.4 NC_002512.2 + 158823 0.71 0.982137
Target:  5'- cGAACCUGCgGG-AGGUGCUgacgcgggggAGCg -3'
miRNA:   3'- cCUUGGAUGgCCaUCCAUGGaua-------UCG- -5'
9031 5' -49.4 NC_002512.2 + 158681 0.67 0.998997
Target:  5'- cGGAucaugGCCgGCCGGgacggggAGGUGCCcgagGUGGa -3'
miRNA:   3'- -CCU-----UGGaUGGCCa------UCCAUGGa---UAUCg -5'
9031 5' -49.4 NC_002512.2 + 158551 0.78 0.789169
Target:  5'- uGGACCUGCUGGUGGGccgcuCCUGgcGCg -3'
miRNA:   3'- cCUUGGAUGGCCAUCCau---GGAUauCG- -5'
9031 5' -49.4 NC_002512.2 + 155292 0.66 0.999824
Target:  5'- cGAGCCga-CGG-AGGgccccgGCCUcgAGCa -3'
miRNA:   3'- cCUUGGaugGCCaUCCa-----UGGAuaUCG- -5'
9031 5' -49.4 NC_002512.2 + 154157 0.66 0.999646
Target:  5'- ---uCCUuCCGGUAggcGGUAcCCUGUGGUu -3'
miRNA:   3'- ccuuGGAuGGCCAU---CCAU-GGAUAUCG- -5'
9031 5' -49.4 NC_002512.2 + 153665 1.15 0.009568
Target:  5'- aGGAACCUACCGGUAGGUACCUAUAGCc -3'
miRNA:   3'- -CCUUGGAUGGCCAUCCAUGGAUAUCG- -5'
9031 5' -49.4 NC_002512.2 + 153639 0.83 0.557619
Target:  5'- aGGACCUACCGGUAGG-ACCUAc--- -3'
miRNA:   3'- cCUUGGAUGGCCAUCCaUGGAUaucg -5'
9031 5' -49.4 NC_002512.2 + 149149 0.66 0.999718
Target:  5'- cGGGACCgccGCgGGgccGGUGCCgcccgcgGGCc -3'
miRNA:   3'- -CCUUGGa--UGgCCau-CCAUGGaua----UCG- -5'
9031 5' -49.4 NC_002512.2 + 148429 0.68 0.998785
Target:  5'- cGGGACC-GCCGGgggAGGacggggGCCg--GGCc -3'
miRNA:   3'- -CCUUGGaUGGCCa--UCCa-----UGGauaUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.