miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9032 3' -62.3 NC_002512.2 + 8169 0.66 0.760597
Target:  5'- cUCGGGGaucucggcguagcaCCCGAGGCCgagCGUCGCCg -3'
miRNA:   3'- cAGUCCUc-------------GGGCUCUGGg--GCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 74622 0.66 0.757035
Target:  5'- ---cGGAGCgCGAGACCgCCG-CGCg- -3'
miRNA:   3'- caguCCUCGgGCUCUGG-GGCaGCGga -5'
9032 3' -62.3 NC_002512.2 + 34878 0.66 0.757035
Target:  5'- cGUCGcc-GCcgCCGGGACCgCCGUCGCCc -3'
miRNA:   3'- -CAGUccuCG--GGCUCUGG-GGCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 213348 0.66 0.757035
Target:  5'- aUCcGGAGCCaggGGGACgCCCG-CGCUg -3'
miRNA:   3'- cAGuCCUCGGg--CUCUG-GGGCaGCGGa -5'
9032 3' -62.3 NC_002512.2 + 118175 0.66 0.757035
Target:  5'- ------cGCCgGAGACUCCGUCGUCa -3'
miRNA:   3'- caguccuCGGgCUCUGGGGCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 123285 0.66 0.757035
Target:  5'- -aCAuGGAGCgCCGGcuGGCCCgGuUCGCCa -3'
miRNA:   3'- caGU-CCUCG-GGCU--CUGGGgC-AGCGGa -5'
9032 3' -62.3 NC_002512.2 + 98464 0.66 0.757035
Target:  5'- -gCGGGAGCCCGccgucACCgUGUCGCa- -3'
miRNA:   3'- caGUCCUCGGGCuc---UGGgGCAGCGga -5'
9032 3' -62.3 NC_002512.2 + 134776 0.66 0.757035
Target:  5'- cGUCGGcGGGCCCG-----CCGUCGCCg -3'
miRNA:   3'- -CAGUC-CUCGGGCucuggGGCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 155676 0.66 0.757035
Target:  5'- cGUCGGGA--CCGcGGCCCacggaCGUCGCCg -3'
miRNA:   3'- -CAGUCCUcgGGCuCUGGG-----GCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 3243 0.66 0.756142
Target:  5'- cGUCGGGugacgacGGUCCGcGGGCucgguCCCGUCGCUg -3'
miRNA:   3'- -CAGUCC-------UCGGGC-UCUG-----GGGCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 20498 0.66 0.751662
Target:  5'- -gCAGGAGCUggccgaggucgaaguCGGGACacaCgGUCGCCa -3'
miRNA:   3'- caGUCCUCGG---------------GCUCUGg--GgCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 126971 0.66 0.748062
Target:  5'- -cCuGGGGCCCGuGGCCgucgaCCG-CGCCa -3'
miRNA:   3'- caGuCCUCGGGCuCUGG-----GGCaGCGGa -5'
9032 3' -62.3 NC_002512.2 + 194533 0.66 0.748062
Target:  5'- aUCAuGGAgGCCCGGGACaaCCGUaacCGCCc -3'
miRNA:   3'- cAGU-CCU-CGGGCUCUGg-GGCA---GCGGa -5'
9032 3' -62.3 NC_002512.2 + 123196 0.66 0.748062
Target:  5'- -aCGGGAcgaggaggagcuGCCCGAGGa--CGUCGCCg -3'
miRNA:   3'- caGUCCU------------CGGGCUCUgggGCAGCGGa -5'
9032 3' -62.3 NC_002512.2 + 81446 0.66 0.748062
Target:  5'- --gGGGGGCCCG-GcCCCCGUCcuCCc -3'
miRNA:   3'- cagUCCUCGGGCuCuGGGGCAGc-GGa -5'
9032 3' -62.3 NC_002512.2 + 37309 0.66 0.748062
Target:  5'- -gCGGGAcgguccGCuCCGAGGCCCCGgccacggacgCGCUg -3'
miRNA:   3'- caGUCCU------CG-GGCUCUGGGGCa---------GCGGa -5'
9032 3' -62.3 NC_002512.2 + 136442 0.66 0.74716
Target:  5'- --gAGGGGaCCCGGGGCCacuacauCCG-CGCCg -3'
miRNA:   3'- cagUCCUC-GGGCUCUGG-------GGCaGCGGa -5'
9032 3' -62.3 NC_002512.2 + 96727 0.66 0.739001
Target:  5'- uUCGcGAGCgCGAuGGCUCCGcCGCCUg -3'
miRNA:   3'- cAGUcCUCGgGCU-CUGGGGCaGCGGA- -5'
9032 3' -62.3 NC_002512.2 + 4653 0.66 0.739001
Target:  5'- -aCGGGAG-CgGAGGCCCCGcCGgCg -3'
miRNA:   3'- caGUCCUCgGgCUCUGGGGCaGCgGa -5'
9032 3' -62.3 NC_002512.2 + 146806 0.66 0.739001
Target:  5'- --gAGGAgGCCCGGGACCuggagaCCuucgcgcgcgagGUCGCCUg -3'
miRNA:   3'- cagUCCU-CGGGCUCUGG------GG------------CAGCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.