Results 21 - 40 of 206 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9036 | 3' | -54.7 | NC_002512.2 | + | 221158 | 0.67 | 0.967148 |
Target: 5'- -gUCGACGGGCgGGCgcgcgcggccgaccgACCUCGGAGUg -3' miRNA: 3'- ugAGUUGCCUGaCUG---------------UGGGGCUUCGg -5' |
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9036 | 3' | -54.7 | NC_002512.2 | + | 129849 | 0.66 | 0.971773 |
Target: 5'- uCUCAGCGcccGGCgGAggaGCCCCuuGAGGCCg -3' miRNA: 3'- uGAGUUGC---CUGaCUg--UGGGG--CUUCGG- -5' |
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9036 | 3' | -54.7 | NC_002512.2 | + | 221649 | 0.66 | 0.974414 |
Target: 5'- uGCUCuACGGcGC-GACGCUC-GAGGCCu -3' miRNA: 3'- -UGAGuUGCC-UGaCUGUGGGgCUUCGG- -5' |
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9036 | 3' | -54.7 | NC_002512.2 | + | 227345 | 0.66 | 0.97915 |
Target: 5'- ---gGACGGAgaGACgggacggaggaGgCCCGggGCCg -3' miRNA: 3'- ugagUUGCCUgaCUG-----------UgGGGCuuCGG- -5' |
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9036 | 3' | -54.7 | NC_002512.2 | + | 184756 | 0.68 | 0.951729 |
Target: 5'- -aUCGGCGGGC-GGCccguggucgucgACCCCGAggacguGGCCc -3' miRNA: 3'- ugAGUUGCCUGaCUG------------UGGGGCU------UCGG- -5' |
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9036 | 3' | -54.7 | NC_002512.2 | + | 122509 | 0.67 | 0.962682 |
Target: 5'- uCUCGgucuCGGuCUGGCuCCCCGGcgcGCCg -3' miRNA: 3'- uGAGUu---GCCuGACUGuGGGGCUu--CGG- -5' |
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9036 | 3' | -54.7 | NC_002512.2 | + | 150908 | 0.66 | 0.971773 |
Target: 5'- uCUCGgccGCGGAC-GACGCUaaguCCG-AGCCg -3' miRNA: 3'- uGAGU---UGCCUGaCUGUGG----GGCuUCGG- -5' |
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9036 | 3' | -54.7 | NC_002512.2 | + | 223198 | 0.66 | 0.97915 |
Target: 5'- cGCcCGACGGGgacGGCGUCCCGGAGCg -3' miRNA: 3'- -UGaGUUGCCUga-CUGUGGGGCUUCGg -5' |
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9036 | 3' | -54.7 | NC_002512.2 | + | 87585 | 0.67 | 0.962682 |
Target: 5'- gACggCGACGGACgcgucgGAUcCCCCGucgacGCCg -3' miRNA: 3'- -UGa-GUUGCCUGa-----CUGuGGGGCuu---CGG- -5' |
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9036 | 3' | -54.7 | NC_002512.2 | + | 108216 | 0.66 | 0.980643 |
Target: 5'- cACUCGGCGGcgacgugaucaaACaggGACGCCgCGAgauccaggacgcggAGCCg -3' miRNA: 3'- -UGAGUUGCC------------UGa--CUGUGGgGCU--------------UCGG- -5' |
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9036 | 3' | -54.7 | NC_002512.2 | + | 77145 | 0.66 | 0.971773 |
Target: 5'- -gUCGGgGGACcuuccGACcgcCCCCGAAGCUu -3' miRNA: 3'- ugAGUUgCCUGa----CUGu--GGGGCUUCGG- -5' |
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9036 | 3' | -54.7 | NC_002512.2 | + | 120877 | 0.67 | 0.965912 |
Target: 5'- -gUCcGCaGGAC-GACGCCgCCGgcGCCg -3' miRNA: 3'- ugAGuUG-CCUGaCUGUGG-GGCuuCGG- -5' |
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9036 | 3' | -54.7 | NC_002512.2 | + | 132940 | 0.66 | 0.974414 |
Target: 5'- --aCGACGGuCggcgcGACGCCCCGcuGCUu -3' miRNA: 3'- ugaGUUGCCuGa----CUGUGGGGCuuCGG- -5' |
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9036 | 3' | -54.7 | NC_002512.2 | + | 162146 | 0.66 | 0.974414 |
Target: 5'- gGCUC-GCGaGGCcGGCACgCCGAccgcgaaagcGGCCg -3' miRNA: 3'- -UGAGuUGC-CUGaCUGUGgGGCU----------UCGG- -5' |
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9036 | 3' | -54.7 | NC_002512.2 | + | 221033 | 0.66 | 0.976871 |
Target: 5'- cAC-CAACGGGgUGcCGCCCgGcagcGAGCCc -3' miRNA: 3'- -UGaGUUGCCUgACuGUGGGgC----UUCGG- -5' |
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9036 | 3' | -54.7 | NC_002512.2 | + | 111225 | 0.66 | 0.97915 |
Target: 5'- gACgauGACGGGCggccgGGCGCCCgGAGcGUCg -3' miRNA: 3'- -UGag-UUGCCUGa----CUGUGGGgCUU-CGG- -5' |
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9036 | 3' | -54.7 | NC_002512.2 | + | 117481 | 0.68 | 0.947644 |
Target: 5'- uGCUCAGCaagcucGGGCUG-CAUCCCGGGuucgcGCUg -3' miRNA: 3'- -UGAGUUG------CCUGACuGUGGGGCUU-----CGG- -5' |
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9036 | 3' | -54.7 | NC_002512.2 | + | 169533 | 0.68 | 0.951729 |
Target: 5'- aGCUCgAACGGGuCccGGCugCCCGGcggcguGGCCu -3' miRNA: 3'- -UGAG-UUGCCU-Ga-CUGugGGGCU------UCGG- -5' |
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9036 | 3' | -54.7 | NC_002512.2 | + | 184558 | 0.67 | 0.955594 |
Target: 5'- gGC-CGGCGGAC-GGCcCUCCGAcccgcgGGCCg -3' miRNA: 3'- -UGaGUUGCCUGaCUGuGGGGCU------UCGG- -5' |
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9036 | 3' | -54.7 | NC_002512.2 | + | 147075 | 0.67 | 0.959243 |
Target: 5'- -----gUGGGC-GACGCUCUGGAGCCg -3' miRNA: 3'- ugaguuGCCUGaCUGUGGGGCUUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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