miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9037 3' -55.6 NC_002512.2 + 133220 0.69 0.878308
Target:  5'- -cGACCuCGUaGAagaggUGACGGCCGGCcCGu -3'
miRNA:   3'- guCUGG-GCA-CUa----ACUGCCGGCUGaGC- -5'
9037 3' -55.6 NC_002512.2 + 226306 0.71 0.817086
Target:  5'- gAGACCCccgGGgccUGugGGCCGugGCUCGg -3'
miRNA:   3'- gUCUGGGca-CUa--ACugCCGGC--UGAGC- -5'
9037 3' -55.6 NC_002512.2 + 105521 0.68 0.931622
Target:  5'- aGGACgCCGUGGcagccGAacugccCGGCCGACUCc -3'
miRNA:   3'- gUCUG-GGCACUaa---CU------GCCGGCUGAGc -5'
9037 3' -55.6 NC_002512.2 + 92651 0.68 0.921315
Target:  5'- gGGACCCGcgcgGAUccggGACGGCCGcC-CGc -3'
miRNA:   3'- gUCUGGGCa---CUAa---CUGCCGGCuGaGC- -5'
9037 3' -55.6 NC_002512.2 + 196413 0.69 0.871317
Target:  5'- gGGACgCGggGGgcGGCGGCCGGgUCGg -3'
miRNA:   3'- gUCUGgGCa-CUaaCUGCCGGCUgAGC- -5'
9037 3' -55.6 NC_002512.2 + 110733 0.67 0.957242
Target:  5'- cCAGGgCCGUGuugugcaGGCGGaaggaCGGCUCGg -3'
miRNA:   3'- -GUCUgGGCACuaa----CUGCCg----GCUGAGC- -5'
9037 3' -55.6 NC_002512.2 + 217765 0.68 0.92658
Target:  5'- cCGGGCCCGUccccgucgccgGggUcGCGGCCGGCUgGc -3'
miRNA:   3'- -GUCUGGGCA-----------CuaAcUGCCGGCUGAgC- -5'
9037 3' -55.6 NC_002512.2 + 217431 0.66 0.975371
Target:  5'- --uACCCGaGA-UGACGGCCGAUa-- -3'
miRNA:   3'- gucUGGGCaCUaACUGCCGGCUGagc -5'
9037 3' -55.6 NC_002512.2 + 27960 0.71 0.782503
Target:  5'- cCGGGCCCGUcgccGAUgGGCGGCCGGg-CGa -3'
miRNA:   3'- -GUCUGGGCA----CUAaCUGCCGGCUgaGC- -5'
9037 3' -55.6 NC_002512.2 + 79085 0.68 0.931622
Target:  5'- -cGACCCGUGAgUGACGGguCUGGgaCGu -3'
miRNA:   3'- guCUGGGCACUaACUGCC--GGCUgaGC- -5'
9037 3' -55.6 NC_002512.2 + 6512 0.68 0.931622
Target:  5'- uCAGgaGCCCGUGAUaGACG-CCGGaUCGg -3'
miRNA:   3'- -GUC--UGGGCACUAaCUGCcGGCUgAGC- -5'
9037 3' -55.6 NC_002512.2 + 95967 0.68 0.92658
Target:  5'- gAGGCCCG-GGUUGgcgcagcgGCGGUCGGCgucCGg -3'
miRNA:   3'- gUCUGGGCaCUAAC--------UGCCGGCUGa--GC- -5'
9037 3' -55.6 NC_002512.2 + 65053 0.69 0.900522
Target:  5'- aAGACUCuuuauuaucGGCGGCCGGCUCGg -3'
miRNA:   3'- gUCUGGGcacuaa---CUGCCGGCUGAGC- -5'
9037 3' -55.6 NC_002512.2 + 2796 0.68 0.92658
Target:  5'- -cGACCCGgcc--GGCGGCCGGCg-- -3'
miRNA:   3'- guCUGGGCacuaaCUGCCGGCUGagc -5'
9037 3' -55.6 NC_002512.2 + 84759 0.66 0.972565
Target:  5'- gUAGGCCagguaggCGUaGUaGAUGGCCGugUCGg -3'
miRNA:   3'- -GUCUGG-------GCAcUAaCUGCCGGCugAGC- -5'
9037 3' -55.6 NC_002512.2 + 2832 0.66 0.972829
Target:  5'- gCGGGCCCG-GAc-GACGGCgGGCa-- -3'
miRNA:   3'- -GUCUGGGCaCUaaCUGCCGgCUGagc -5'
9037 3' -55.6 NC_002512.2 + 56994 0.69 0.891672
Target:  5'- gGGACagCCGUG---GGCGGCCGGgUCGg -3'
miRNA:   3'- gUCUG--GGCACuaaCUGCCGGCUgAGC- -5'
9037 3' -55.6 NC_002512.2 + 105109 0.66 0.972829
Target:  5'- cCGGACCCGgGAcUGcGCGGUCGuCUgGg -3'
miRNA:   3'- -GUCUGGGCaCUaAC-UGCCGGCuGAgC- -5'
9037 3' -55.6 NC_002512.2 + 37993 0.66 0.975371
Target:  5'- ---uCCCauGUGAaugGACGGCCG-CUCGg -3'
miRNA:   3'- gucuGGG--CACUaa-CUGCCGGCuGAGC- -5'
9037 3' -55.6 NC_002512.2 + 9975 0.66 0.975371
Target:  5'- gAGACCgacgacgagaCGaGAggagGGCGGUCGGCUCGu -3'
miRNA:   3'- gUCUGG----------GCaCUaa--CUGCCGGCUGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.