Results 61 - 80 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9045 | 5' | -53.6 | NC_002512.2 | + | 113163 | 0.67 | 0.968909 |
Target: 5'- -aGCCGG--GCCACGUCggacGUGCcGGGGc -3' miRNA: 3'- uaUGGCCuuUGGUGCGG----UACGuCUCC- -5' |
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9045 | 5' | -53.6 | NC_002512.2 | + | 139260 | 0.67 | 0.965822 |
Target: 5'- -cGCCGGGucgcGCCGC-CCGgcgcGCGGGGGc -3' miRNA: 3'- uaUGGCCUu---UGGUGcGGUa---CGUCUCC- -5' |
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9045 | 5' | -53.6 | NC_002512.2 | + | 226586 | 0.67 | 0.965822 |
Target: 5'- -gGCCaGGAGGgCGCgGCCcgGgGGAGGa -3' miRNA: 3'- uaUGG-CCUUUgGUG-CGGuaCgUCUCC- -5' |
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9045 | 5' | -53.6 | NC_002512.2 | + | 124426 | 0.67 | 0.965822 |
Target: 5'- cGUGCaCGGGacGACgaACGUCcUGCGGAGGa -3' miRNA: 3'- -UAUG-GCCU--UUGg-UGCGGuACGUCUCC- -5' |
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9045 | 5' | -53.6 | NC_002512.2 | + | 144569 | 0.67 | 0.965822 |
Target: 5'- -aACCGGcGACCuACGUCGaGCGGcAGGc -3' miRNA: 3'- uaUGGCCuUUGG-UGCGGUaCGUC-UCC- -5' |
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9045 | 5' | -53.6 | NC_002512.2 | + | 194029 | 0.67 | 0.965822 |
Target: 5'- -gACCGGGAGucggcgauCCAgGCCGccuggcUGguGAGGg -3' miRNA: 3'- uaUGGCCUUU--------GGUgCGGU------ACguCUCC- -5' |
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9045 | 5' | -53.6 | NC_002512.2 | + | 15127 | 0.67 | 0.965822 |
Target: 5'- -cGCCGGAcugcGACggCACGCUGUuccgcGCAGGGGu -3' miRNA: 3'- uaUGGCCU----UUG--GUGCGGUA-----CGUCUCC- -5' |
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9045 | 5' | -53.6 | NC_002512.2 | + | 129018 | 0.68 | 0.962524 |
Target: 5'- -gGCCGGGAggaguucgaACCG-GCCGUGCGGGu- -3' miRNA: 3'- uaUGGCCUU---------UGGUgCGGUACGUCUcc -5' |
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9045 | 5' | -53.6 | NC_002512.2 | + | 120768 | 0.68 | 0.962524 |
Target: 5'- cGUGCUGGAcuCgGCgGCCGUcgGCGGGGGc -3' miRNA: 3'- -UAUGGCCUuuGgUG-CGGUA--CGUCUCC- -5' |
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9045 | 5' | -53.6 | NC_002512.2 | + | 119165 | 0.68 | 0.962524 |
Target: 5'- -aACaCGGcccuGGCCaACGCCAUGCAGcuGGc -3' miRNA: 3'- uaUG-GCCu---UUGG-UGCGGUACGUCu-CC- -5' |
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9045 | 5' | -53.6 | NC_002512.2 | + | 155806 | 0.68 | 0.962524 |
Target: 5'- cUGCCucgaGGAGGCCGUGuCCGUGCAGAu- -3' miRNA: 3'- uAUGG----CCUUUGGUGC-GGUACGUCUcc -5' |
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9045 | 5' | -53.6 | NC_002512.2 | + | 129833 | 0.68 | 0.962524 |
Target: 5'- -cGCCGcc-GCCcccgcgucucaGCGCCcgGCGGAGGa -3' miRNA: 3'- uaUGGCcuuUGG-----------UGCGGuaCGUCUCC- -5' |
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9045 | 5' | -53.6 | NC_002512.2 | + | 162130 | 0.68 | 0.962524 |
Target: 5'- -cGCCGGAGACgAC-CCcgGCucgcGAGGc -3' miRNA: 3'- uaUGGCCUUUGgUGcGGuaCGu---CUCC- -5' |
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9045 | 5' | -53.6 | NC_002512.2 | + | 149521 | 0.68 | 0.962524 |
Target: 5'- -gGCCGGAGcggGCCG-GCCAggaGGAGGa -3' miRNA: 3'- uaUGGCCUU---UGGUgCGGUacgUCUCC- -5' |
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9045 | 5' | -53.6 | NC_002512.2 | + | 98931 | 0.68 | 0.962524 |
Target: 5'- -gACCgGGGAGCCAgaGCCGgaUGCAGucGGg -3' miRNA: 3'- uaUGG-CCUUUGGUg-CGGU--ACGUCu-CC- -5' |
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9045 | 5' | -53.6 | NC_002512.2 | + | 98765 | 0.68 | 0.959012 |
Target: 5'- -cAUCGGGu-CCugGCCGU-CGGGGGg -3' miRNA: 3'- uaUGGCCUuuGGugCGGUAcGUCUCC- -5' |
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9045 | 5' | -53.6 | NC_002512.2 | + | 149475 | 0.68 | 0.959012 |
Target: 5'- -cGCCGacAGCCACGCCAccauCGGGGGc -3' miRNA: 3'- uaUGGCcuUUGGUGCGGUac--GUCUCC- -5' |
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9045 | 5' | -53.6 | NC_002512.2 | + | 96812 | 0.68 | 0.959012 |
Target: 5'- -aACCGGAc-CCAcCGCCugcaguaccUGCAGGGGc -3' miRNA: 3'- uaUGGCCUuuGGU-GCGGu--------ACGUCUCC- -5' |
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9045 | 5' | -53.6 | NC_002512.2 | + | 174400 | 0.68 | 0.959012 |
Target: 5'- -cACCGuaAAACCACGCCucucccauauuGUGUAGAGa -3' miRNA: 3'- uaUGGCc-UUUGGUGCGG-----------UACGUCUCc -5' |
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9045 | 5' | -53.6 | NC_002512.2 | + | 226892 | 0.68 | 0.959012 |
Target: 5'- -gGCCcGGGACCGgGCCAcGCGGgAGGc -3' miRNA: 3'- uaUGGcCUUUGGUgCGGUaCGUC-UCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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