miRNA display CGI


Results 41 - 60 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9045 5' -53.6 NC_002512.2 + 67161 0.66 0.985187
Target:  5'- -gACCGGAuagGACCGCaGCCAUGUc---- -3'
miRNA:   3'- uaUGGCCU---UUGGUG-CGGUACGucucc -5'
9045 5' -53.6 NC_002512.2 + 67554 0.67 0.971793
Target:  5'- --gUCGGuGGACaGCGCCAUGCAGAu- -3'
miRNA:   3'- uauGGCC-UUUGgUGCGGUACGUCUcc -5'
9045 5' -53.6 NC_002512.2 + 68051 0.77 0.531507
Target:  5'- cGUGuCCGGAAGCCuCGUCGgaGCAGAGGg -3'
miRNA:   3'- -UAU-GGCCUUUGGuGCGGUa-CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 70688 0.76 0.621878
Target:  5'- --cCCGGGGACCG-GCCggGCGGGGGa -3'
miRNA:   3'- uauGGCCUUUGGUgCGGuaCGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 74614 0.66 0.980796
Target:  5'- -gACCGGAGcggagcgcgagaccGCCGCGCgAcgGCccGGGGGa -3'
miRNA:   3'- uaUGGCCUU--------------UGGUGCGgUa-CG--UCUCC- -5'
9045 5' -53.6 NC_002512.2 + 75532 0.69 0.917136
Target:  5'- ---aCGGgcACCcucgACGCCGUgGCGGAGGa -3'
miRNA:   3'- uaugGCCuuUGG----UGCGGUA-CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 75564 0.67 0.976973
Target:  5'- -cGCCGGGgcggGGCCGcCGCCGUcGCGGucGa -3'
miRNA:   3'- uaUGGCCU----UUGGU-GCGGUA-CGUCucC- -5'
9045 5' -53.6 NC_002512.2 + 78735 0.7 0.905252
Target:  5'- -gGCUGGGagguGACCACGUCA--CGGAGGg -3'
miRNA:   3'- uaUGGCCU----UUGGUGCGGUacGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 81900 0.7 0.885697
Target:  5'- uGUACucgCGGAggUCguGCGCCGUGgAGGGGg -3'
miRNA:   3'- -UAUG---GCCUuuGG--UGCGGUACgUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 86204 0.66 0.988343
Target:  5'- cGUGCCcGAcACCcCGCCcgGCuucggGGAGGg -3'
miRNA:   3'- -UAUGGcCUuUGGuGCGGuaCG-----UCUCC- -5'
9045 5' -53.6 NC_002512.2 + 92567 0.66 0.988343
Target:  5'- --gUCGGAGgcGCCgACGCCGcgGCcgGGAGGg -3'
miRNA:   3'- uauGGCCUU--UGG-UGCGGUa-CG--UCUCC- -5'
9045 5' -53.6 NC_002512.2 + 93710 0.66 0.986838
Target:  5'- --cCCGGcGACCcCGCCGcGCGGcGGa -3'
miRNA:   3'- uauGGCCuUUGGuGCGGUaCGUCuCC- -5'
9045 5' -53.6 NC_002512.2 + 95922 0.69 0.93664
Target:  5'- -gAUCGGAaaguccuugaccuuGAUCGCGCCcuccgGCGGGGGg -3'
miRNA:   3'- uaUGGCCU--------------UUGGUGCGGua---CGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 96516 0.74 0.742137
Target:  5'- -cGCCGGAgggAGCCGCGCCG-GCGGugugagccGGGg -3'
miRNA:   3'- uaUGGCCU---UUGGUGCGGUaCGUC--------UCC- -5'
9045 5' -53.6 NC_002512.2 + 96744 0.71 0.848744
Target:  5'- -aACCGGAcgagcgagcggGGCCccguccgagcgGCGCCAUGCAGAu- -3'
miRNA:   3'- uaUGGCCU-----------UUGG-----------UGCGGUACGUCUcc -5'
9045 5' -53.6 NC_002512.2 + 96812 0.68 0.959012
Target:  5'- -aACCGGAc-CCAcCGCCugcaguaccUGCAGGGGc -3'
miRNA:   3'- uaUGGCCUuuGGU-GCGGu--------ACGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 97941 0.66 0.983383
Target:  5'- -cGCCGGGcaugagguuCUACGCUcccGUGCAGcAGGg -3'
miRNA:   3'- uaUGGCCUuu-------GGUGCGG---UACGUC-UCC- -5'
9045 5' -53.6 NC_002512.2 + 98765 0.68 0.959012
Target:  5'- -cAUCGGGu-CCugGCCGU-CGGGGGg -3'
miRNA:   3'- uaUGGCCUuuGGugCGGUAcGUCUCC- -5'
9045 5' -53.6 NC_002512.2 + 98931 0.68 0.962524
Target:  5'- -gACCgGGGAGCCAgaGCCGgaUGCAGucGGg -3'
miRNA:   3'- uaUGG-CCUUUGGUg-CGGU--ACGUCu-CC- -5'
9045 5' -53.6 NC_002512.2 + 99916 0.69 0.942727
Target:  5'- -cGCCGGggGCC-CGCCGaaggGCGGcgucGGc -3'
miRNA:   3'- uaUGGCCuuUGGuGCGGUa---CGUCu---CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.