miRNA display CGI


Results 81 - 100 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9049 3' -61 NC_002512.2 + 71771 0.66 0.838544
Target:  5'- uGC-CGAGGAaGCGGuUGugGaaGCGGu -3'
miRNA:   3'- gCGaGCUCCUgCGCC-GCugCgaCGCC- -5'
9049 3' -61 NC_002512.2 + 71976 0.68 0.700904
Target:  5'- uCGCagUUGGGGAacaUGCGGuCGugGCaGCGGu -3'
miRNA:   3'- -GCG--AGCUCCU---GCGCC-GCugCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 73973 0.73 0.452055
Target:  5'- aGCUgGAGGACGCGuCGGCGC--CGGa -3'
miRNA:   3'- gCGAgCUCCUGCGCcGCUGCGacGCC- -5'
9049 3' -61 NC_002512.2 + 74169 0.67 0.790304
Target:  5'- cCGCUCGGGauccagguggaGGCgccggcacaggGCGGCGACGUccGUGGg -3'
miRNA:   3'- -GCGAGCUC-----------CUG-----------CGCCGCUGCGa-CGCC- -5'
9049 3' -61 NC_002512.2 + 74638 0.66 0.830871
Target:  5'- aGC-CGucGACGCcGCGACGg-GCGGg -3'
miRNA:   3'- gCGaGCucCUGCGcCGCUGCgaCGCC- -5'
9049 3' -61 NC_002512.2 + 74753 0.71 0.549254
Target:  5'- uGUuuUCGGGGACcCGGCGgcccuuuauauacACGUUGCGGa -3'
miRNA:   3'- gCG--AGCUCCUGcGCCGC-------------UGCGACGCC- -5'
9049 3' -61 NC_002512.2 + 75031 0.69 0.653879
Target:  5'- gGC-CGGGGACGaGGgGACGCacgacggaggGCGGg -3'
miRNA:   3'- gCGaGCUCCUGCgCCgCUGCGa---------CGCC- -5'
9049 3' -61 NC_002512.2 + 75244 0.66 0.805305
Target:  5'- uCGCUCG-GGACgGCGGUuuuugaaaaagcGCGCgaGCGGg -3'
miRNA:   3'- -GCGAGCuCCUG-CGCCGc-----------UGCGa-CGCC- -5'
9049 3' -61 NC_002512.2 + 75560 0.69 0.67655
Target:  5'- gGCUCGccGGGGCggggccgccgccgucGCGGuCGACGUgGCGGc -3'
miRNA:   3'- gCGAGC--UCCUG---------------CGCC-GCUGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 77542 0.67 0.790304
Target:  5'- uGCUCgGAGGucCGCGGUGuCGUcaugaccacccUGUGGg -3'
miRNA:   3'- gCGAG-CUCCu-GCGCCGCuGCG-----------ACGCC- -5'
9049 3' -61 NC_002512.2 + 79325 0.67 0.786915
Target:  5'- cCGCUCcuccuccccucccAGGuCGCGGCGGCGUacccucGCGGc -3'
miRNA:   3'- -GCGAGc------------UCCuGCGCCGCUGCGa-----CGCC- -5'
9049 3' -61 NC_002512.2 + 79930 0.7 0.606475
Target:  5'- gGCUCGaAGGcCGaGGCGGCGCgGgGGu -3'
miRNA:   3'- gCGAGC-UCCuGCgCCGCUGCGaCgCC- -5'
9049 3' -61 NC_002512.2 + 80686 0.67 0.796188
Target:  5'- gGCgaCGGGGGCgaGCGGCGuccggggggcgaggGCGC-GCGGg -3'
miRNA:   3'- gCGa-GCUCCUG--CGCCGC--------------UGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 80780 0.71 0.559472
Target:  5'- gGCUCGAGGAggaGCGGCGcgaggaggaggaGCGC-GCGc -3'
miRNA:   3'- gCGAGCUCCUg--CGCCGC------------UGCGaCGCc -5'
9049 3' -61 NC_002512.2 + 81227 0.68 0.746683
Target:  5'- cCGCUgGAucgGGugGCggaaggaguccGGCGGC-CUGCGGu -3'
miRNA:   3'- -GCGAgCU---CCugCG-----------CCGCUGcGACGCC- -5'
9049 3' -61 NC_002512.2 + 81987 0.67 0.79869
Target:  5'- gGCggCGGGGGCGUcucgggGGCGGuCGCgGCGa -3'
miRNA:   3'- gCGa-GCUCCUGCG------CCGCU-GCGaCGCc -5'
9049 3' -61 NC_002512.2 + 82031 0.7 0.62543
Target:  5'- gGgUCGGGGucGCGcCGGCGGCGgUcGCGGc -3'
miRNA:   3'- gCgAGCUCC--UGC-GCCGCUGCgA-CGCC- -5'
9049 3' -61 NC_002512.2 + 82357 0.76 0.314885
Target:  5'- gGCgugCGGGGGCGgcggagGGUGAUGCUGCGGc -3'
miRNA:   3'- gCGa--GCUCCUGCg-----CCGCUGCGACGCC- -5'
9049 3' -61 NC_002512.2 + 82686 0.66 0.815066
Target:  5'- cCGCUCG-GGcUGuCGGCGuccguGCGCggcGCGGg -3'
miRNA:   3'- -GCGAGCuCCuGC-GCCGC-----UGCGa--CGCC- -5'
9049 3' -61 NC_002512.2 + 83795 0.69 0.682194
Target:  5'- cCGC-CGAGGAcCGCgucgGGCG-CGCcgGCGGc -3'
miRNA:   3'- -GCGaGCUCCU-GCG----CCGCuGCGa-CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.