miRNA display CGI


Results 81 - 100 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9049 3' -61 NC_002512.2 + 88265 0.67 0.790304
Target:  5'- uGUUggaGAGGugGCGGCaGGCGUgucgggacGCGGc -3'
miRNA:   3'- gCGAg--CUCCugCGCCG-CUGCGa-------CGCC- -5'
9049 3' -61 NC_002512.2 + 74169 0.67 0.790304
Target:  5'- cCGCUCGGGauccagguggaGGCgccggcacaggGCGGCGACGUccGUGGg -3'
miRNA:   3'- -GCGAGCUC-----------CUG-----------CGCCGCUGCGa-CGCC- -5'
9049 3' -61 NC_002512.2 + 80686 0.67 0.796188
Target:  5'- gGCgaCGGGGGCgaGCGGCGuccggggggcgaggGCGC-GCGGg -3'
miRNA:   3'- gCGa-GCUCCUG--CGCCGC--------------UGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 47952 0.67 0.79869
Target:  5'- aGCcCGAGGAacgagGUGGCGGagGCcGCGGa -3'
miRNA:   3'- gCGaGCUCCUg----CGCCGCUg-CGaCGCC- -5'
9049 3' -61 NC_002512.2 + 43033 0.67 0.79869
Target:  5'- aGgUCGAGG-CGCagguccucGGCGACGC-GCaGGg -3'
miRNA:   3'- gCgAGCUCCuGCG--------CCGCUGCGaCG-CC- -5'
9049 3' -61 NC_002512.2 + 81987 0.67 0.79869
Target:  5'- gGCggCGGGGGCGUcucgggGGCGGuCGCgGCGa -3'
miRNA:   3'- gCGa-GCUCCUGCG------CCGCU-GCGaCGCc -5'
9049 3' -61 NC_002512.2 + 170355 0.67 0.790304
Target:  5'- cCGCgaucagCGuGGccagggccguGCGCGGCGccGCGCUGCa- -3'
miRNA:   3'- -GCGa-----GCuCC----------UGCGCCGC--UGCGACGcc -5'
9049 3' -61 NC_002512.2 + 144525 0.67 0.790304
Target:  5'- gGUccgCGuGGGCGCGGUccucgugugcGACGC-GCGGa -3'
miRNA:   3'- gCGa--GCuCCUGCGCCG----------CUGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 131396 0.67 0.790304
Target:  5'- aGCagGAGGAgGcCGGgGAagaGCUGCGa -3'
miRNA:   3'- gCGagCUCCUgC-GCCgCUg--CGACGCc -5'
9049 3' -61 NC_002512.2 + 207924 0.67 0.790304
Target:  5'- aGCUCGAacGGGCcCGGUGGUGCU-CGGg -3'
miRNA:   3'- gCGAGCU--CCUGcGCCGCUGCGAcGCC- -5'
9049 3' -61 NC_002512.2 + 147676 0.67 0.781797
Target:  5'- cCGCUUcccgccccggGAGGACGcCGGcCGACG--GCGGa -3'
miRNA:   3'- -GCGAG----------CUCCUGC-GCC-GCUGCgaCGCC- -5'
9049 3' -61 NC_002512.2 + 219265 0.67 0.781797
Target:  5'- uGCUCGuccggcAGGGgGCGGacgcCGACGCcGUGGc -3'
miRNA:   3'- gCGAGC------UCCUgCGCC----GCUGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 149415 0.67 0.773173
Target:  5'- gGCcgCGAGGGgacCGCGGCGgGgGCgggcGCGGg -3'
miRNA:   3'- gCGa-GCUCCU---GCGCCGC-UgCGa---CGCC- -5'
9049 3' -61 NC_002512.2 + 153395 0.67 0.772305
Target:  5'- aGCgaCGuGGAgCGCGGCGGCGgUcgaggugGCGGa -3'
miRNA:   3'- gCGa-GCuCCU-GCGCCGCUGCgA-------CGCC- -5'
9049 3' -61 NC_002512.2 + 161990 0.67 0.764442
Target:  5'- uCGCUCGuGGACcUGGUG-CGggaUGCGGa -3'
miRNA:   3'- -GCGAGCuCCUGcGCCGCuGCg--ACGCC- -5'
9049 3' -61 NC_002512.2 + 116168 0.67 0.764442
Target:  5'- aGC-CGcuGGCGCcgGGCGaguuccacGCGCUGCGGg -3'
miRNA:   3'- gCGaGCucCUGCG--CCGC--------UGCGACGCC- -5'
9049 3' -61 NC_002512.2 + 102283 0.67 0.764442
Target:  5'- gGCUCG-GcGCGCgucgaccgccagGGCGACGUcGCGGa -3'
miRNA:   3'- gCGAGCuCcUGCG------------CCGCUGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 90443 0.67 0.764442
Target:  5'- gGCagGaAGGGCgGCGGCcgGGCcaGCUGCGGg -3'
miRNA:   3'- gCGagC-UCCUG-CGCCG--CUG--CGACGCC- -5'
9049 3' -61 NC_002512.2 + 107507 0.67 0.755609
Target:  5'- aCGCUCu-GGAUGacauCGGCGuagugcucgGCGUUGCGGg -3'
miRNA:   3'- -GCGAGcuCCUGC----GCCGC---------UGCGACGCC- -5'
9049 3' -61 NC_002512.2 + 114022 0.67 0.755609
Target:  5'- cCGCagCGGcaccGGGCGCGGUGgACGUagaggGCGGg -3'
miRNA:   3'- -GCGa-GCU----CCUGCGCCGC-UGCGa----CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.