Results 61 - 80 of 313 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
9049 | 3' | -61 | NC_002512.2 | + | 17907 | 0.67 | 0.764442 |
Target: 5'- gGCccCGAGGACGaCGGCcGCGUccUGaCGGa -3' miRNA: 3'- gCGa-GCUCCUGC-GCCGcUGCG--AC-GCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 66735 | 0.67 | 0.764442 |
Target: 5'- cCGUcaCGaAGGugGCGGUGAgGCUaCGGg -3' miRNA: 3'- -GCGa-GC-UCCugCGCCGCUgCGAcGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 134395 | 0.67 | 0.764442 |
Target: 5'- aCGUcgUGuGGAUGCGGCGGCGguuccggguCUGCGu -3' miRNA: 3'- -GCGa-GCuCCUGCGCCGCUGC---------GACGCc -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 151873 | 0.67 | 0.773173 |
Target: 5'- uGaCUCGuGGGCGcCGGCGAUcC-GCGGa -3' miRNA: 3'- gC-GAGCuCCUGC-GCCGCUGcGaCGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 52721 | 0.67 | 0.773173 |
Target: 5'- aCGCg-GGGGagcagaagcGCGCGGaGACGCUGCa- -3' miRNA: 3'- -GCGagCUCC---------UGCGCCgCUGCGACGcc -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 86122 | 0.67 | 0.773173 |
Target: 5'- gCGCggagGAGGuCGCGGaccuggaagcCGACGCcGCGGc -3' miRNA: 3'- -GCGag--CUCCuGCGCC----------GCUGCGaCGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 134302 | 0.67 | 0.781797 |
Target: 5'- uCGUcuUCGAGGACGUcgccggGGcCGGCGCcGaCGGa -3' miRNA: 3'- -GCG--AGCUCCUGCG------CC-GCUGCGaC-GCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 135385 | 0.67 | 0.781797 |
Target: 5'- gGUUCGAaGACGCGccCGACGaCUGCGu -3' miRNA: 3'- gCGAGCUcCUGCGCc-GCUGC-GACGCc -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 121564 | 0.67 | 0.75472 |
Target: 5'- aCGCUgGAGGACGUguucucguuGGCcgagucgaucuccGACGcCUGCGa -3' miRNA: 3'- -GCGAgCUCCUGCG---------CCG-------------CUGC-GACGCc -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 58197 | 0.67 | 0.781797 |
Target: 5'- aCGCUgGugaguGGGCGCGGCGcgcaccccGCGC-GCGu -3' miRNA: 3'- -GCGAgCu----CCUGCGCCGC--------UGCGaCGCc -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 79325 | 0.67 | 0.786915 |
Target: 5'- cCGCUCcuccuccccucccAGGuCGCGGCGGCGUacccucGCGGc -3' miRNA: 3'- -GCGAGc------------UCCuGCGCCGCUGCGa-----CGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 5256 | 0.67 | 0.788612 |
Target: 5'- gGC-CGAGGcCGCGGCGGCGaccccgagccCGGu -3' miRNA: 3'- gCGaGCUCCuGCGCCGCUGCgac-------GCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 86924 | 0.67 | 0.789459 |
Target: 5'- uCGUUCGAGGucauccuguCGgaggagacggcgaUGGUGACGCUGuCGGu -3' miRNA: 3'- -GCGAGCUCCu--------GC-------------GCCGCUGCGAC-GCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 77542 | 0.67 | 0.790304 |
Target: 5'- uGCUCgGAGGucCGCGGUGuCGUcaugaccacccUGUGGg -3' miRNA: 3'- gCGAG-CUCCu-GCGCCGCuGCG-----------ACGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 88265 | 0.67 | 0.790304 |
Target: 5'- uGUUggaGAGGugGCGGCaGGCGUgucgggacGCGGc -3' miRNA: 3'- gCGAg--CUCCugCGCCG-CUGCGa-------CGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 74169 | 0.67 | 0.790304 |
Target: 5'- cCGCUCGGGauccagguggaGGCgccggcacaggGCGGCGACGUccGUGGg -3' miRNA: 3'- -GCGAGCUC-----------CUG-----------CGCCGCUGCGa-CGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 80686 | 0.67 | 0.796188 |
Target: 5'- gGCgaCGGGGGCgaGCGGCGuccggggggcgaggGCGC-GCGGg -3' miRNA: 3'- gCGa-GCUCCUG--CGCCGC--------------UGCGaCGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 47952 | 0.67 | 0.79869 |
Target: 5'- aGCcCGAGGAacgagGUGGCGGagGCcGCGGa -3' miRNA: 3'- gCGaGCUCCUg----CGCCGCUg-CGaCGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 43033 | 0.67 | 0.79869 |
Target: 5'- aGgUCGAGG-CGCagguccucGGCGACGC-GCaGGg -3' miRNA: 3'- gCgAGCUCCuGCG--------CCGCUGCGaCG-CC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 81987 | 0.67 | 0.79869 |
Target: 5'- gGCggCGGGGGCGUcucgggGGCGGuCGCgGCGa -3' miRNA: 3'- gCGa-GCUCCUGCG------CCGCU-GCGaCGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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