miRNA display CGI


Results 61 - 80 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9049 3' -61 NC_002512.2 + 17907 0.67 0.764442
Target:  5'- gGCccCGAGGACGaCGGCcGCGUccUGaCGGa -3'
miRNA:   3'- gCGa-GCUCCUGC-GCCGcUGCG--AC-GCC- -5'
9049 3' -61 NC_002512.2 + 66735 0.67 0.764442
Target:  5'- cCGUcaCGaAGGugGCGGUGAgGCUaCGGg -3'
miRNA:   3'- -GCGa-GC-UCCugCGCCGCUgCGAcGCC- -5'
9049 3' -61 NC_002512.2 + 134395 0.67 0.764442
Target:  5'- aCGUcgUGuGGAUGCGGCGGCGguuccggguCUGCGu -3'
miRNA:   3'- -GCGa-GCuCCUGCGCCGCUGC---------GACGCc -5'
9049 3' -61 NC_002512.2 + 151873 0.67 0.773173
Target:  5'- uGaCUCGuGGGCGcCGGCGAUcC-GCGGa -3'
miRNA:   3'- gC-GAGCuCCUGC-GCCGCUGcGaCGCC- -5'
9049 3' -61 NC_002512.2 + 52721 0.67 0.773173
Target:  5'- aCGCg-GGGGagcagaagcGCGCGGaGACGCUGCa- -3'
miRNA:   3'- -GCGagCUCC---------UGCGCCgCUGCGACGcc -5'
9049 3' -61 NC_002512.2 + 86122 0.67 0.773173
Target:  5'- gCGCggagGAGGuCGCGGaccuggaagcCGACGCcGCGGc -3'
miRNA:   3'- -GCGag--CUCCuGCGCC----------GCUGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 134302 0.67 0.781797
Target:  5'- uCGUcuUCGAGGACGUcgccggGGcCGGCGCcGaCGGa -3'
miRNA:   3'- -GCG--AGCUCCUGCG------CC-GCUGCGaC-GCC- -5'
9049 3' -61 NC_002512.2 + 135385 0.67 0.781797
Target:  5'- gGUUCGAaGACGCGccCGACGaCUGCGu -3'
miRNA:   3'- gCGAGCUcCUGCGCc-GCUGC-GACGCc -5'
9049 3' -61 NC_002512.2 + 121564 0.67 0.75472
Target:  5'- aCGCUgGAGGACGUguucucguuGGCcgagucgaucuccGACGcCUGCGa -3'
miRNA:   3'- -GCGAgCUCCUGCG---------CCG-------------CUGC-GACGCc -5'
9049 3' -61 NC_002512.2 + 58197 0.67 0.781797
Target:  5'- aCGCUgGugaguGGGCGCGGCGcgcaccccGCGC-GCGu -3'
miRNA:   3'- -GCGAgCu----CCUGCGCCGC--------UGCGaCGCc -5'
9049 3' -61 NC_002512.2 + 79325 0.67 0.786915
Target:  5'- cCGCUCcuccuccccucccAGGuCGCGGCGGCGUacccucGCGGc -3'
miRNA:   3'- -GCGAGc------------UCCuGCGCCGCUGCGa-----CGCC- -5'
9049 3' -61 NC_002512.2 + 5256 0.67 0.788612
Target:  5'- gGC-CGAGGcCGCGGCGGCGaccccgagccCGGu -3'
miRNA:   3'- gCGaGCUCCuGCGCCGCUGCgac-------GCC- -5'
9049 3' -61 NC_002512.2 + 86924 0.67 0.789459
Target:  5'- uCGUUCGAGGucauccuguCGgaggagacggcgaUGGUGACGCUGuCGGu -3'
miRNA:   3'- -GCGAGCUCCu--------GC-------------GCCGCUGCGAC-GCC- -5'
9049 3' -61 NC_002512.2 + 77542 0.67 0.790304
Target:  5'- uGCUCgGAGGucCGCGGUGuCGUcaugaccacccUGUGGg -3'
miRNA:   3'- gCGAG-CUCCu-GCGCCGCuGCG-----------ACGCC- -5'
9049 3' -61 NC_002512.2 + 88265 0.67 0.790304
Target:  5'- uGUUggaGAGGugGCGGCaGGCGUgucgggacGCGGc -3'
miRNA:   3'- gCGAg--CUCCugCGCCG-CUGCGa-------CGCC- -5'
9049 3' -61 NC_002512.2 + 74169 0.67 0.790304
Target:  5'- cCGCUCGGGauccagguggaGGCgccggcacaggGCGGCGACGUccGUGGg -3'
miRNA:   3'- -GCGAGCUC-----------CUG-----------CGCCGCUGCGa-CGCC- -5'
9049 3' -61 NC_002512.2 + 80686 0.67 0.796188
Target:  5'- gGCgaCGGGGGCgaGCGGCGuccggggggcgaggGCGC-GCGGg -3'
miRNA:   3'- gCGa-GCUCCUG--CGCCGC--------------UGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 47952 0.67 0.79869
Target:  5'- aGCcCGAGGAacgagGUGGCGGagGCcGCGGa -3'
miRNA:   3'- gCGaGCUCCUg----CGCCGCUg-CGaCGCC- -5'
9049 3' -61 NC_002512.2 + 43033 0.67 0.79869
Target:  5'- aGgUCGAGG-CGCagguccucGGCGACGC-GCaGGg -3'
miRNA:   3'- gCgAGCUCCuGCG--------CCGCUGCGaCG-CC- -5'
9049 3' -61 NC_002512.2 + 81987 0.67 0.79869
Target:  5'- gGCggCGGGGGCGUcucgggGGCGGuCGCgGCGa -3'
miRNA:   3'- gCGa-GCUCCUGCG------CCGCU-GCGaCGCc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.