miRNA display CGI


Results 61 - 80 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9049 3' -61 NC_002512.2 + 97748 0.72 0.469228
Target:  5'- -cCUCGAGGugGCGGuCGucuUGCUcGCGGc -3'
miRNA:   3'- gcGAGCUCCugCGCC-GCu--GCGA-CGCC- -5'
9049 3' -61 NC_002512.2 + 22982 0.72 0.469228
Target:  5'- cCGCggCG-GGACGCgGGCGGCGCUgGUGa -3'
miRNA:   3'- -GCGa-GCuCCUGCG-CCGCUGCGA-CGCc -5'
9049 3' -61 NC_002512.2 + 191267 0.72 0.469228
Target:  5'- aGggCGGGGAgGCGGCGACGgggaggGCGGc -3'
miRNA:   3'- gCgaGCUCCUgCGCCGCUGCga----CGCC- -5'
9049 3' -61 NC_002512.2 + 153946 0.72 0.472703
Target:  5'- aCGUUCGGGGACgucggguucuucgggGUccGGCGGCGCcgGCGGc -3'
miRNA:   3'- -GCGAGCUCCUG---------------CG--CCGCUGCGa-CGCC- -5'
9049 3' -61 NC_002512.2 + 55549 0.72 0.477939
Target:  5'- gCGgaCGAGGGCGCGGCGGaccccCGcCUGCu- -3'
miRNA:   3'- -GCgaGCUCCUGCGCCGCU-----GC-GACGcc -5'
9049 3' -61 NC_002512.2 + 169062 0.72 0.477939
Target:  5'- gGCgCGAGGGgcucCGCGGCGGCgGCgucGCGGc -3'
miRNA:   3'- gCGaGCUCCU----GCGCCGCUG-CGa--CGCC- -5'
9049 3' -61 NC_002512.2 + 103457 0.72 0.477939
Target:  5'- gCGCgggucCGAGGACGCGGCucgggucucggcGGCgGCcGCGGa -3'
miRNA:   3'- -GCGa----GCUCCUGCGCCG------------CUG-CGaCGCC- -5'
9049 3' -61 NC_002512.2 + 43069 0.72 0.485847
Target:  5'- uCGC-CGAGGcaccggucccgggGCGCGGCGA-GCaGCGGg -3'
miRNA:   3'- -GCGaGCUCC-------------UGCGCCGCUgCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 60844 0.72 0.486729
Target:  5'- gCGCcCGAGGAgaUGcCGGCGcCGCUcGCGGa -3'
miRNA:   3'- -GCGaGCUCCU--GC-GCCGCuGCGA-CGCC- -5'
9049 3' -61 NC_002512.2 + 133794 0.72 0.486729
Target:  5'- gGCggCGGGGACGaCGGUcGCGCcgggUGCGGg -3'
miRNA:   3'- gCGa-GCUCCUGC-GCCGcUGCG----ACGCC- -5'
9049 3' -61 NC_002512.2 + 205388 0.72 0.495595
Target:  5'- gGC-CcAGGAagGCGGCGGCGCaGCGGa -3'
miRNA:   3'- gCGaGcUCCUg-CGCCGCUGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 204812 0.72 0.499162
Target:  5'- cCGCguccCGGGGGCGCGGCGgcuccguccgggaggACGacgGCGGu -3'
miRNA:   3'- -GCGa---GCUCCUGCGCCGC---------------UGCga-CGCC- -5'
9049 3' -61 NC_002512.2 + 150662 0.72 0.510832
Target:  5'- aGCUCGAgccucgagguccgcGGGCGCGGCGGuCGCcccGaCGGa -3'
miRNA:   3'- gCGAGCU--------------CCUGCGCCGCU-GCGa--C-GCC- -5'
9049 3' -61 NC_002512.2 + 33631 0.72 0.513541
Target:  5'- uCGCcgaggCGAGaGGCGCGcGCgGGCGCgGCGGa -3'
miRNA:   3'- -GCGa----GCUC-CUGCGC-CG-CUGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 34930 0.72 0.513541
Target:  5'- aCGacggCGGGGuCGCGGCGACGgggaGCGGa -3'
miRNA:   3'- -GCga--GCUCCuGCGCCGCUGCga--CGCC- -5'
9049 3' -61 NC_002512.2 + 170815 0.71 0.522613
Target:  5'- aGCgaCGGGGGCggcaGCGGCGGCaGCgGCGGc -3'
miRNA:   3'- gCGa-GCUCCUG----CGCCGCUG-CGaCGCC- -5'
9049 3' -61 NC_002512.2 + 51155 0.71 0.52626
Target:  5'- aCGCUgGAcgccaucucgaaacuGGgccuggccagcaACGCGGCGgccGCGCUGCGGg -3'
miRNA:   3'- -GCGAgCU---------------CC------------UGCGCCGC---UGCGACGCC- -5'
9049 3' -61 NC_002512.2 + 132155 0.71 0.530831
Target:  5'- -cCUCGAGGucggugaGCGCGGCGuCGUgaGCGGg -3'
miRNA:   3'- gcGAGCUCC-------UGCGCCGCuGCGa-CGCC- -5'
9049 3' -61 NC_002512.2 + 127093 0.71 0.531747
Target:  5'- aGCg-GAGGGCgGCGGCGGCG--GCGGg -3'
miRNA:   3'- gCGagCUCCUG-CGCCGCUGCgaCGCC- -5'
9049 3' -61 NC_002512.2 + 160910 0.71 0.531747
Target:  5'- gGC-CGgggcaaGGGACGCGGacaGuCGCUGCGGc -3'
miRNA:   3'- gCGaGC------UCCUGCGCCg--CuGCGACGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.