miRNA display CGI


Results 41 - 60 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9049 3' -61 NC_002512.2 + 97805 0.74 0.410688
Target:  5'- cCGCUCGcugaacuccgGGGACGCggaguagagGGCGGCGCgggggaaGCGGa -3'
miRNA:   3'- -GCGAGC----------UCCUGCG---------CCGCUGCGa------CGCC- -5'
9049 3' -61 NC_002512.2 + 133719 0.73 0.418774
Target:  5'- aCGCUcaacuucgugaCGAGGACGCGGUGAaggucuuccagcUGCcGCGGu -3'
miRNA:   3'- -GCGA-----------GCUCCUGCGCCGCU------------GCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 223794 0.73 0.418774
Target:  5'- uCGC-CGGGGACGuCGGCGGCGaCcGcCGGg -3'
miRNA:   3'- -GCGaGCUCCUGC-GCCGCUGC-GaC-GCC- -5'
9049 3' -61 NC_002512.2 + 6403 0.73 0.418774
Target:  5'- gGCa-GGGaGGCgGCGGCGGCGCUGgGGa -3'
miRNA:   3'- gCGagCUC-CUG-CGCCGCUGCGACgCC- -5'
9049 3' -61 NC_002512.2 + 127478 0.73 0.418774
Target:  5'- uGC-CGuccGGACGCGGCGACGUcgGCuGGa -3'
miRNA:   3'- gCGaGCu--CCUGCGCCGCUGCGa-CG-CC- -5'
9049 3' -61 NC_002512.2 + 196407 0.73 0.418774
Target:  5'- gGCgCGGGGACGCGG-GGgGCgGCGGc -3'
miRNA:   3'- gCGaGCUCCUGCGCCgCUgCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 211345 0.73 0.422035
Target:  5'- gCGCUgGGGGACGCGcGCGgccugaccgcccggcGCggcauGCUGCGGa -3'
miRNA:   3'- -GCGAgCUCCUGCGC-CGC---------------UG-----CGACGCC- -5'
9049 3' -61 NC_002512.2 + 221400 0.73 0.42449
Target:  5'- gCGCgggCGGGGAgGCGGCGGgucuguccgacggcCGCcaUGCGGa -3'
miRNA:   3'- -GCGa--GCUCCUgCGCCGCU--------------GCG--ACGCC- -5'
9049 3' -61 NC_002512.2 + 149374 0.73 0.426955
Target:  5'- aGgaCGAGGGCGCGGgGACGCa--GGa -3'
miRNA:   3'- gCgaGCUCCUGCGCCgCUGCGacgCC- -5'
9049 3' -61 NC_002512.2 + 152796 0.73 0.426955
Target:  5'- cCGuCUCgGAGGucCGCGGCGACgGCggGCGGc -3'
miRNA:   3'- -GC-GAG-CUCCu-GCGCCGCUG-CGa-CGCC- -5'
9049 3' -61 NC_002512.2 + 144625 0.73 0.426955
Target:  5'- gCGCUgGAcGugGCGGCcACGCgGCGGa -3'
miRNA:   3'- -GCGAgCUcCugCGCCGcUGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 204638 0.73 0.426955
Target:  5'- gGgaCGGGGACcgggaCGGCGACGC-GCGGg -3'
miRNA:   3'- gCgaGCUCCUGc----GCCGCUGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 118947 0.73 0.43523
Target:  5'- aGCUCGAGGggaGCGUGG-GGCGgCgGCGGg -3'
miRNA:   3'- gCGAGCUCC---UGCGCCgCUGC-GaCGCC- -5'
9049 3' -61 NC_002512.2 + 20854 0.73 0.43523
Target:  5'- uCGCUCcGGGACGCGGCcgcccCGCUcaugGCGGc -3'
miRNA:   3'- -GCGAGcUCCUGCGCCGcu---GCGA----CGCC- -5'
9049 3' -61 NC_002512.2 + 119091 0.73 0.443597
Target:  5'- uCGCgCGAGGAggUGCgGGCGGCcucggcgcaGCUGCGGa -3'
miRNA:   3'- -GCGaGCUCCU--GCG-CCGCUG---------CGACGCC- -5'
9049 3' -61 NC_002512.2 + 97364 0.73 0.443597
Target:  5'- cCGCggagCGGGGAcCGCGGCGGcCGgaGaCGGg -3'
miRNA:   3'- -GCGa---GCUCCU-GCGCCGCU-GCgaC-GCC- -5'
9049 3' -61 NC_002512.2 + 73973 0.73 0.452055
Target:  5'- aGCUgGAGGACGCGuCGGCGC--CGGa -3'
miRNA:   3'- gCGAgCUCCUGCGCcGCUGCGacGCC- -5'
9049 3' -61 NC_002512.2 + 12774 0.73 0.452055
Target:  5'- cCGC-CGcAGGACuCGGCGGCGCccccgcugccccUGCGGa -3'
miRNA:   3'- -GCGaGC-UCCUGcGCCGCUGCG------------ACGCC- -5'
9049 3' -61 NC_002512.2 + 150326 0.73 0.460599
Target:  5'- gGCggCGAGGACGCcGCGGCGgUGaUGGa -3'
miRNA:   3'- gCGa-GCUCCUGCGcCGCUGCgAC-GCC- -5'
9049 3' -61 NC_002512.2 + 29899 0.73 0.460599
Target:  5'- cCGCUCGuccccgccGGGCGCGcG-GACGCgGCGGg -3'
miRNA:   3'- -GCGAGCu-------CCUGCGC-CgCUGCGaCGCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.