miRNA display CGI


Results 41 - 60 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9049 3' -61 NC_002512.2 + 29013 0.7 0.62543
Target:  5'- aCGUggUGGGcGGCGUGGuCGACGCcaUGCGGc -3'
miRNA:   3'- -GCGa-GCUC-CUGCGCC-GCUGCG--ACGCC- -5'
9049 3' -61 NC_002512.2 + 29899 0.73 0.460599
Target:  5'- cCGCUCGuccccgccGGGCGCGcG-GACGCgGCGGg -3'
miRNA:   3'- -GCGAGCu-------CCUGCGC-CgCUGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 30412 0.74 0.379338
Target:  5'- aCGgaCGGGGACGCgGGCGuCGUcGCGGc -3'
miRNA:   3'- -GCgaGCUCCUGCG-CCGCuGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 31656 0.69 0.663342
Target:  5'- cCGgaCGGcgcGGGCGCGGcCGugGUgGCGGa -3'
miRNA:   3'- -GCgaGCU---CCUGCGCC-GCugCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 31811 0.66 0.806946
Target:  5'- aCGC-CG-GGGCGCGGUcgagggGACGC-GCGa -3'
miRNA:   3'- -GCGaGCuCCUGCGCCG------CUGCGaCGCc -5'
9049 3' -61 NC_002512.2 + 33631 0.72 0.513541
Target:  5'- uCGCcgaggCGAGaGGCGCGcGCgGGCGCgGCGGa -3'
miRNA:   3'- -GCGa----GCUC-CUGCGC-CG-CUGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 34052 0.7 0.638712
Target:  5'- uGCUCGAGGcgugccccACGaCGGCGGCgucgacgauguccccGCaGCGGa -3'
miRNA:   3'- gCGAGCUCC--------UGC-GCCGCUG---------------CGaCGCC- -5'
9049 3' -61 NC_002512.2 + 34930 0.72 0.513541
Target:  5'- aCGacggCGGGGuCGCGGCGACGgggaGCGGa -3'
miRNA:   3'- -GCga--GCUCCuGCGCCGCUGCga--CGCC- -5'
9049 3' -61 NC_002512.2 + 35108 0.67 0.763563
Target:  5'- cCGCUCGGaguucccguGGACGCGGaccaggucccgacUGGCGCccacgGUGGa -3'
miRNA:   3'- -GCGAGCU---------CCUGCGCC-------------GCUGCGa----CGCC- -5'
9049 3' -61 NC_002512.2 + 35272 0.68 0.700904
Target:  5'- cCGCggCGAcGGcCGCGGCGGCGgagGCGa -3'
miRNA:   3'- -GCGa-GCU-CCuGCGCCGCUGCga-CGCc -5'
9049 3' -61 NC_002512.2 + 38011 0.69 0.657666
Target:  5'- cCGCUCGGGGACuGCgcgagacaaaagagaGGgGACGCcggagggGUGGg -3'
miRNA:   3'- -GCGAGCUCCUG-CG---------------CCgCUGCGa------CGCC- -5'
9049 3' -61 NC_002512.2 + 40032 0.66 0.830871
Target:  5'- aCGCgcgaCGAGGuuGCGGaCGuuuCGCccGCGGg -3'
miRNA:   3'- -GCGa---GCUCCugCGCC-GCu--GCGa-CGCC- -5'
9049 3' -61 NC_002512.2 + 42579 0.66 0.846055
Target:  5'- gCGCcgCGAGG-CGa-GCGGCGggGCGGa -3'
miRNA:   3'- -GCGa-GCUCCuGCgcCGCUGCgaCGCC- -5'
9049 3' -61 NC_002512.2 + 43033 0.67 0.79869
Target:  5'- aGgUCGAGG-CGCagguccucGGCGACGC-GCaGGg -3'
miRNA:   3'- gCgAGCUCCuGCG--------CCGCUGCGaCG-CC- -5'
9049 3' -61 NC_002512.2 + 43069 0.72 0.485847
Target:  5'- uCGC-CGAGGcaccggucccgggGCGCGGCGA-GCaGCGGg -3'
miRNA:   3'- -GCGaGCUCC-------------UGCGCCGCUgCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 43490 0.71 0.540938
Target:  5'- aGC-CGAGGACGCGGaGcUGCaGCGGu -3'
miRNA:   3'- gCGaGCUCCUGCGCCgCuGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 43600 0.77 0.264841
Target:  5'- uCGCggaCGAGGACGCGGag--GCUGCGGa -3'
miRNA:   3'- -GCGa--GCUCCUGCGCCgcugCGACGCC- -5'
9049 3' -61 NC_002512.2 + 45193 0.68 0.710189
Target:  5'- gGuCUCGAccgGGAC-CGGCGGCGCgGaCGGc -3'
miRNA:   3'- gC-GAGCU---CCUGcGCCGCUGCGaC-GCC- -5'
9049 3' -61 NC_002512.2 + 45406 0.74 0.387024
Target:  5'- uCGCUCGugcGGGCGCucgacGGCGGCGCcggccGCGGc -3'
miRNA:   3'- -GCGAGCu--CCUGCG-----CCGCUGCGa----CGCC- -5'
9049 3' -61 NC_002512.2 + 45521 0.66 0.838544
Target:  5'- gCGCccgCGGcGGGCgGCGGCGGCGacuUGgGGu -3'
miRNA:   3'- -GCGa--GCU-CCUG-CGCCGCUGCg--ACgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.