Results 21 - 40 of 313 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9049 | 3' | -61 | NC_002512.2 | + | 14635 | 0.79 | 0.206796 |
Target: 5'- gCGCUUGAGGAagGCGGCGuaGCUGUGGg -3' miRNA: 3'- -GCGAGCUCCUg-CGCCGCugCGACGCC- -5' |
|||||||
9049 | 3' | -61 | NC_002512.2 | + | 15395 | 0.66 | 0.830871 |
Target: 5'- gGCgaucCGcAGGAgGCGGaaGACGCcGCGGu -3' miRNA: 3'- gCGa---GC-UCCUgCGCCg-CUGCGaCGCC- -5' |
|||||||
9049 | 3' | -61 | NC_002512.2 | + | 15456 | 0.7 | 0.634917 |
Target: 5'- aCGUagaCGGGGACGCGGUccucgGGCGCgGCGc -3' miRNA: 3'- -GCGa--GCUCCUGCGCCG-----CUGCGaCGCc -5' |
|||||||
9049 | 3' | -61 | NC_002512.2 | + | 16197 | 0.76 | 0.314885 |
Target: 5'- aGUUCGAGGAcCGCgGGCGACGC--CGGg -3' miRNA: 3'- gCGAGCUCCU-GCG-CCGCUGCGacGCC- -5' |
|||||||
9049 | 3' | -61 | NC_002512.2 | + | 17035 | 0.68 | 0.710189 |
Target: 5'- aCGCUCGgagGGGACGgaCGGCGcccGCGCccaaccccgGCGGc -3' miRNA: 3'- -GCGAGC---UCCUGC--GCCGC---UGCGa--------CGCC- -5' |
|||||||
9049 | 3' | -61 | NC_002512.2 | + | 17907 | 0.67 | 0.764442 |
Target: 5'- gGCccCGAGGACGaCGGCcGCGUccUGaCGGa -3' miRNA: 3'- gCGa-GCUCCUGC-GCCGcUGCG--AC-GCC- -5' |
|||||||
9049 | 3' | -61 | NC_002512.2 | + | 17981 | 0.67 | 0.773173 |
Target: 5'- aCGCUCGAcGACGCGGCa--GCccCGGa -3' miRNA: 3'- -GCGAGCUcCUGCGCCGcugCGacGCC- -5' |
|||||||
9049 | 3' | -61 | NC_002512.2 | + | 18014 | 0.69 | 0.653879 |
Target: 5'- cCGCUCcAGGGCGCcGaCGAUGCUGaGGu -3' miRNA: 3'- -GCGAGcUCCUGCGcC-GCUGCGACgCC- -5' |
|||||||
9049 | 3' | -61 | NC_002512.2 | + | 18690 | 0.68 | 0.710189 |
Target: 5'- aGCUCGugggcggcGGGCaccccgagcaggGCGGCGACGCgcuCGGg -3' miRNA: 3'- gCGAGCu-------CCUG------------CGCCGCUGCGac-GCC- -5' |
|||||||
9049 | 3' | -61 | NC_002512.2 | + | 18950 | 0.66 | 0.838544 |
Target: 5'- gGcCUCGGGGcggacugcauCGCGGCGAUGaUGcCGGa -3' miRNA: 3'- gC-GAGCUCCu---------GCGCCGCUGCgAC-GCC- -5' |
|||||||
9049 | 3' | -61 | NC_002512.2 | + | 20854 | 0.73 | 0.43523 |
Target: 5'- uCGCUCcGGGACGCGGCcgcccCGCUcaugGCGGc -3' miRNA: 3'- -GCGAGcUCCUGCGCCGcu---GCGA----CGCC- -5' |
|||||||
9049 | 3' | -61 | NC_002512.2 | + | 21063 | 0.66 | 0.806946 |
Target: 5'- gCGCgUGAGGGCGCacgGGCGGCggucccGCUcCGGg -3' miRNA: 3'- -GCGaGCUCCUGCG---CCGCUG------CGAcGCC- -5' |
|||||||
9049 | 3' | -61 | NC_002512.2 | + | 22325 | 0.66 | 0.846797 |
Target: 5'- aCGCga-GGGACGCGaGgGACGCgagggaggagucgcaGCGGg -3' miRNA: 3'- -GCGagcUCCUGCGC-CgCUGCGa--------------CGCC- -5' |
|||||||
9049 | 3' | -61 | NC_002512.2 | + | 22982 | 0.72 | 0.469228 |
Target: 5'- cCGCggCG-GGACGCgGGCGGCGCUgGUGa -3' miRNA: 3'- -GCGa-GCuCCUGCG-CCGCUGCGA-CGCc -5' |
|||||||
9049 | 3' | -61 | NC_002512.2 | + | 24267 | 0.68 | 0.728579 |
Target: 5'- gGCagGaAGGACgGCGGCGACgGCaucccGCGGg -3' miRNA: 3'- gCGagC-UCCUG-CGCCGCUG-CGa----CGCC- -5' |
|||||||
9049 | 3' | -61 | NC_002512.2 | + | 24705 | 0.71 | 0.559472 |
Target: 5'- --gUCGAGGACGCGGgcgagggaGACGCgGCGu -3' miRNA: 3'- gcgAGCUCCUGCGCCg-------CUGCGaCGCc -5' |
|||||||
9049 | 3' | -61 | NC_002512.2 | + | 25635 | 0.67 | 0.764442 |
Target: 5'- uGUg-GAGGuuauCGGCGGCGCUGCGa -3' miRNA: 3'- gCGagCUCCugc-GCCGCUGCGACGCc -5' |
|||||||
9049 | 3' | -61 | NC_002512.2 | + | 27782 | 0.69 | 0.649142 |
Target: 5'- aGCUgaCGAGGACGCGGUcggacgaggugaccGGCGCcccguaccgcaaGCGGg -3' miRNA: 3'- gCGA--GCUCCUGCGCCG--------------CUGCGa-----------CGCC- -5' |
|||||||
9049 | 3' | -61 | NC_002512.2 | + | 28251 | 0.66 | 0.806946 |
Target: 5'- uCGCgccgCGAGuACGaCGGCGccuaccgcucgGCGCUGgCGGa -3' miRNA: 3'- -GCGa---GCUCcUGC-GCCGC-----------UGCGAC-GCC- -5' |
|||||||
9049 | 3' | -61 | NC_002512.2 | + | 28498 | 0.68 | 0.728579 |
Target: 5'- uCGggCGAcuGGACGCGGUGAUccagggggugaGCUGuCGGg -3' miRNA: 3'- -GCgaGCU--CCUGCGCCGCUG-----------CGAC-GCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home