miRNA display CGI


Results 21 - 40 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9049 3' -61 NC_002512.2 + 14635 0.79 0.206796
Target:  5'- gCGCUUGAGGAagGCGGCGuaGCUGUGGg -3'
miRNA:   3'- -GCGAGCUCCUg-CGCCGCugCGACGCC- -5'
9049 3' -61 NC_002512.2 + 15395 0.66 0.830871
Target:  5'- gGCgaucCGcAGGAgGCGGaaGACGCcGCGGu -3'
miRNA:   3'- gCGa---GC-UCCUgCGCCg-CUGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 15456 0.7 0.634917
Target:  5'- aCGUagaCGGGGACGCGGUccucgGGCGCgGCGc -3'
miRNA:   3'- -GCGa--GCUCCUGCGCCG-----CUGCGaCGCc -5'
9049 3' -61 NC_002512.2 + 16197 0.76 0.314885
Target:  5'- aGUUCGAGGAcCGCgGGCGACGC--CGGg -3'
miRNA:   3'- gCGAGCUCCU-GCG-CCGCUGCGacGCC- -5'
9049 3' -61 NC_002512.2 + 17035 0.68 0.710189
Target:  5'- aCGCUCGgagGGGACGgaCGGCGcccGCGCccaaccccgGCGGc -3'
miRNA:   3'- -GCGAGC---UCCUGC--GCCGC---UGCGa--------CGCC- -5'
9049 3' -61 NC_002512.2 + 17907 0.67 0.764442
Target:  5'- gGCccCGAGGACGaCGGCcGCGUccUGaCGGa -3'
miRNA:   3'- gCGa-GCUCCUGC-GCCGcUGCG--AC-GCC- -5'
9049 3' -61 NC_002512.2 + 17981 0.67 0.773173
Target:  5'- aCGCUCGAcGACGCGGCa--GCccCGGa -3'
miRNA:   3'- -GCGAGCUcCUGCGCCGcugCGacGCC- -5'
9049 3' -61 NC_002512.2 + 18014 0.69 0.653879
Target:  5'- cCGCUCcAGGGCGCcGaCGAUGCUGaGGu -3'
miRNA:   3'- -GCGAGcUCCUGCGcC-GCUGCGACgCC- -5'
9049 3' -61 NC_002512.2 + 18690 0.68 0.710189
Target:  5'- aGCUCGugggcggcGGGCaccccgagcaggGCGGCGACGCgcuCGGg -3'
miRNA:   3'- gCGAGCu-------CCUG------------CGCCGCUGCGac-GCC- -5'
9049 3' -61 NC_002512.2 + 18950 0.66 0.838544
Target:  5'- gGcCUCGGGGcggacugcauCGCGGCGAUGaUGcCGGa -3'
miRNA:   3'- gC-GAGCUCCu---------GCGCCGCUGCgAC-GCC- -5'
9049 3' -61 NC_002512.2 + 20854 0.73 0.43523
Target:  5'- uCGCUCcGGGACGCGGCcgcccCGCUcaugGCGGc -3'
miRNA:   3'- -GCGAGcUCCUGCGCCGcu---GCGA----CGCC- -5'
9049 3' -61 NC_002512.2 + 21063 0.66 0.806946
Target:  5'- gCGCgUGAGGGCGCacgGGCGGCggucccGCUcCGGg -3'
miRNA:   3'- -GCGaGCUCCUGCG---CCGCUG------CGAcGCC- -5'
9049 3' -61 NC_002512.2 + 22325 0.66 0.846797
Target:  5'- aCGCga-GGGACGCGaGgGACGCgagggaggagucgcaGCGGg -3'
miRNA:   3'- -GCGagcUCCUGCGC-CgCUGCGa--------------CGCC- -5'
9049 3' -61 NC_002512.2 + 22982 0.72 0.469228
Target:  5'- cCGCggCG-GGACGCgGGCGGCGCUgGUGa -3'
miRNA:   3'- -GCGa-GCuCCUGCG-CCGCUGCGA-CGCc -5'
9049 3' -61 NC_002512.2 + 24267 0.68 0.728579
Target:  5'- gGCagGaAGGACgGCGGCGACgGCaucccGCGGg -3'
miRNA:   3'- gCGagC-UCCUG-CGCCGCUG-CGa----CGCC- -5'
9049 3' -61 NC_002512.2 + 24705 0.71 0.559472
Target:  5'- --gUCGAGGACGCGGgcgagggaGACGCgGCGu -3'
miRNA:   3'- gcgAGCUCCUGCGCCg-------CUGCGaCGCc -5'
9049 3' -61 NC_002512.2 + 25635 0.67 0.764442
Target:  5'- uGUg-GAGGuuauCGGCGGCGCUGCGa -3'
miRNA:   3'- gCGagCUCCugc-GCCGCUGCGACGCc -5'
9049 3' -61 NC_002512.2 + 27782 0.69 0.649142
Target:  5'- aGCUgaCGAGGACGCGGUcggacgaggugaccGGCGCcccguaccgcaaGCGGg -3'
miRNA:   3'- gCGA--GCUCCUGCGCCG--------------CUGCGa-----------CGCC- -5'
9049 3' -61 NC_002512.2 + 28251 0.66 0.806946
Target:  5'- uCGCgccgCGAGuACGaCGGCGccuaccgcucgGCGCUGgCGGa -3'
miRNA:   3'- -GCGa---GCUCcUGC-GCCGC-----------UGCGAC-GCC- -5'
9049 3' -61 NC_002512.2 + 28498 0.68 0.728579
Target:  5'- uCGggCGAcuGGACGCGGUGAUccagggggugaGCUGuCGGg -3'
miRNA:   3'- -GCgaGCU--CCUGCGCCGCUG-----------CGAC-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.