miRNA display CGI


Results 21 - 40 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9049 3' -61 NC_002512.2 + 123675 0.76 0.308257
Target:  5'- gGCUCGGGGAagcgguccguCGCGGCGgggcguugGCGCaGCGGu -3'
miRNA:   3'- gCGAGCUCCU----------GCGCCGC--------UGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 16197 0.76 0.314885
Target:  5'- aGUUCGAGGAcCGCgGGCGACGC--CGGg -3'
miRNA:   3'- gCGAGCUCCU-GCG-CCGCUGCGacGCC- -5'
9049 3' -61 NC_002512.2 + 82357 0.76 0.314885
Target:  5'- gGCgugCGGGGGCGgcggagGGUGAUGCUGCGGc -3'
miRNA:   3'- gCGa--GCUCCUGCg-----CCGCUGCGACGCC- -5'
9049 3' -61 NC_002512.2 + 101437 0.75 0.328463
Target:  5'- gGC-CGGcGGCGCGGCGACGCcgagaGCGGg -3'
miRNA:   3'- gCGaGCUcCUGCGCCGCUGCGa----CGCC- -5'
9049 3' -61 NC_002512.2 + 189897 0.75 0.349632
Target:  5'- gGCggCGAGGACgGCGGCGAgGacgGCGGc -3'
miRNA:   3'- gCGa-GCUCCUG-CGCCGCUgCga-CGCC- -5'
9049 3' -61 NC_002512.2 + 211745 0.75 0.356901
Target:  5'- gGCcCGc-GACGCGGCccgGGCGCUGCGGg -3'
miRNA:   3'- gCGaGCucCUGCGCCG---CUGCGACGCC- -5'
9049 3' -61 NC_002512.2 + 101896 0.75 0.363533
Target:  5'- aGCgCGGGGACGCcgacgggGGCGGCGUguucuccaUGCGGg -3'
miRNA:   3'- gCGaGCUCCUGCG-------CCGCUGCG--------ACGCC- -5'
9049 3' -61 NC_002512.2 + 11413 0.75 0.363533
Target:  5'- cCGCgggaCGAGGAgaugaccgcggucCGCGGgGACGCcGCGGa -3'
miRNA:   3'- -GCGa---GCUCCU-------------GCGCCgCUGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 209279 0.75 0.364275
Target:  5'- -cUUCGAGGACGUGGa-GCGCUGCGu -3'
miRNA:   3'- gcGAGCUCCUGCGCCgcUGCGACGCc -5'
9049 3' -61 NC_002512.2 + 3052 0.74 0.371002
Target:  5'- cCGcCUUGAcggcggcGGACGCGGCGGCgGCgGCGGc -3'
miRNA:   3'- -GC-GAGCU-------CCUGCGCCGCUG-CGaCGCC- -5'
9049 3' -61 NC_002512.2 + 60795 0.74 0.371755
Target:  5'- cCGCgaggaCGAGGACGCGggccGCGACGCcgccgccGCGGa -3'
miRNA:   3'- -GCGa----GCUCCUGCGC----CGCUGCGa------CGCC- -5'
9049 3' -61 NC_002512.2 + 30412 0.74 0.379338
Target:  5'- aCGgaCGGGGACGCgGGCGuCGUcGCGGc -3'
miRNA:   3'- -GCgaGCUCCUGCG-CCGCuGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 108306 0.74 0.379338
Target:  5'- aGCUCGGuGugGUccauGGCGGCGCgcgGCGGg -3'
miRNA:   3'- gCGAGCUcCugCG----CCGCUGCGa--CGCC- -5'
9049 3' -61 NC_002512.2 + 135894 0.74 0.379338
Target:  5'- aGUUCGAGGACGCGuucGCGgACGCgcaGCGa -3'
miRNA:   3'- gCGAGCUCCUGCGC---CGC-UGCGa--CGCc -5'
9049 3' -61 NC_002512.2 + 128811 0.74 0.387024
Target:  5'- aGCgaGAGGuCgGCGGCGGCGCUGuCGGc -3'
miRNA:   3'- gCGagCUCCuG-CGCCGCUGCGAC-GCC- -5'
9049 3' -61 NC_002512.2 + 45406 0.74 0.387024
Target:  5'- uCGCUCGugcGGGCGCucgacGGCGGCGCcggccGCGGc -3'
miRNA:   3'- -GCGAGCu--CCUGCG-----CCGCUGCGa----CGCC- -5'
9049 3' -61 NC_002512.2 + 221663 0.74 0.394812
Target:  5'- aCGCUCGAggccuacgucugGGACGCggacacccgcccGGCGACGCU-CGGc -3'
miRNA:   3'- -GCGAGCU------------CCUGCG------------CCGCUGCGAcGCC- -5'
9049 3' -61 NC_002512.2 + 94124 0.74 0.4027
Target:  5'- -uCUCGucggccAGGACGCGGaUGACGCgGCGGa -3'
miRNA:   3'- gcGAGC------UCCUGCGCC-GCUGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 54679 0.74 0.4027
Target:  5'- gCGgaCGGuGGACGCGGCGAugaaCGC-GCGGg -3'
miRNA:   3'- -GCgaGCU-CCUGCGCCGCU----GCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 133225 0.74 0.410688
Target:  5'- cCGCccagCGAGGACgggaggGCGGCGGCGCcccggucGCGGu -3'
miRNA:   3'- -GCGa---GCUCCUG------CGCCGCUGCGa------CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.