miRNA display CGI


Results 21 - 40 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9049 3' -61 NC_002512.2 + 74638 0.66 0.830871
Target:  5'- aGC-CGucGACGCcGCGACGg-GCGGg -3'
miRNA:   3'- gCGaGCucCUGCGcCGCUGCgaCGCC- -5'
9049 3' -61 NC_002512.2 + 111003 0.66 0.830871
Target:  5'- cCGCUCGAGGAagaggGUGGUGuCGCaguccaGaCGGg -3'
miRNA:   3'- -GCGAGCUCCUg----CGCCGCuGCGa-----C-GCC- -5'
9049 3' -61 NC_002512.2 + 40032 0.66 0.830871
Target:  5'- aCGCgcgaCGAGGuuGCGGaCGuuuCGCccGCGGg -3'
miRNA:   3'- -GCGa---GCUCCugCGCC-GCu--GCGa-CGCC- -5'
9049 3' -61 NC_002512.2 + 228245 0.66 0.830871
Target:  5'- gGCgaaCGugccGGACGCGGgGGCGaCUgaccGCGGa -3'
miRNA:   3'- gCGa--GCu---CCUGCGCCgCUGC-GA----CGCC- -5'
9049 3' -61 NC_002512.2 + 195789 0.66 0.830871
Target:  5'- uGgaCGuGGGCGUGuuGCucCGCUGCGGg -3'
miRNA:   3'- gCgaGCuCCUGCGC--CGcuGCGACGCC- -5'
9049 3' -61 NC_002512.2 + 15395 0.66 0.830871
Target:  5'- gGCgaucCGcAGGAgGCGGaaGACGCcGCGGu -3'
miRNA:   3'- gCGa---GC-UCCUgCGCCg-CUGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 59223 0.66 0.830095
Target:  5'- aCGCUcacccgaCGAGGAaacCGCaGGCcgaGGCGCcgGCGGa -3'
miRNA:   3'- -GCGA-------GCUCCU---GCG-CCG---CUGCGa-CGCC- -5'
9049 3' -61 NC_002512.2 + 183455 0.66 0.828539
Target:  5'- gCGgUCGAGaACGuCGGCGcCGCcaccaaggccgugcUGCGGg -3'
miRNA:   3'- -GCgAGCUCcUGC-GCCGCuGCG--------------ACGCC- -5'
9049 3' -61 NC_002512.2 + 136062 0.66 0.825407
Target:  5'- uGCUacCGAgaaccugGGugGCGGCGuuccugcugcugcucGCGCUGgCGGc -3'
miRNA:   3'- gCGA--GCU-------CCugCGCCGC---------------UGCGAC-GCC- -5'
9049 3' -61 NC_002512.2 + 197901 0.66 0.823043
Target:  5'- -uCUCGGGGAgGgGGgGACGggacgUGCGGa -3'
miRNA:   3'- gcGAGCUCCUgCgCCgCUGCg----ACGCC- -5'
9049 3' -61 NC_002512.2 + 119135 0.66 0.823043
Target:  5'- gCGCUaccGGGACGCGaCGAuccUGCUGcCGGa -3'
miRNA:   3'- -GCGAgc-UCCUGCGCcGCU---GCGAC-GCC- -5'
9049 3' -61 NC_002512.2 + 125604 0.66 0.823043
Target:  5'- cCGC-CGccGGACGCGaGaaaGACGCcgGCGGc -3'
miRNA:   3'- -GCGaGCu-CCUGCGC-Cg--CUGCGa-CGCC- -5'
9049 3' -61 NC_002512.2 + 150036 0.66 0.823043
Target:  5'- aGgaCGAGGGgGcCGGgGACGaCgggGCGGg -3'
miRNA:   3'- gCgaGCUCCUgC-GCCgCUGC-Ga--CGCC- -5'
9049 3' -61 NC_002512.2 + 158287 0.66 0.822252
Target:  5'- aGCUgGAGGGCGUGcCGGCccccaagGCcGCGGu -3'
miRNA:   3'- gCGAgCUCCUGCGCcGCUG-------CGaCGCC- -5'
9049 3' -61 NC_002512.2 + 97119 0.66 0.818274
Target:  5'- uGUUCGAGGGagaccuucgcccgccUGCGGgaCGACGCcgcgcugcgccUGCGGc -3'
miRNA:   3'- gCGAGCUCCU---------------GCGCC--GCUGCG-----------ACGCC- -5'
9049 3' -61 NC_002512.2 + 113739 0.66 0.815066
Target:  5'- gGCUCGGGGAUGuuGCcGAccacgauaCGCgGCGGc -3'
miRNA:   3'- gCGAGCUCCUGCgcCG-CU--------GCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 7453 0.66 0.815066
Target:  5'- gGCcCGGGGGaagcCGCGGCG-CgGCUGcCGGc -3'
miRNA:   3'- gCGaGCUCCU----GCGCCGCuG-CGAC-GCC- -5'
9049 3' -61 NC_002512.2 + 192579 0.66 0.815066
Target:  5'- gGcCUCGGagcGGACcgucccgcugcuGCGGCGcGCGCgGCGGg -3'
miRNA:   3'- gC-GAGCU---CCUG------------CGCCGC-UGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 133584 0.66 0.815066
Target:  5'- cCGC-CGGGGACccgaGCGGgcCGGCcucCUGCGGa -3'
miRNA:   3'- -GCGaGCUCCUG----CGCC--GCUGc--GACGCC- -5'
9049 3' -61 NC_002512.2 + 82686 0.66 0.815066
Target:  5'- cCGCUCG-GGcUGuCGGCGuccguGCGCggcGCGGg -3'
miRNA:   3'- -GCGAGCuCCuGC-GCCGC-----UGCGa--CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.