miRNA display CGI


Results 21 - 40 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9049 3' -61 NC_002512.2 + 75244 0.66 0.805305
Target:  5'- uCGCUCG-GGACgGCGGUuuuugaaaaagcGCGCgaGCGGg -3'
miRNA:   3'- -GCGAGCuCCUG-CGCCGc-----------UGCGa-CGCC- -5'
9049 3' -61 NC_002512.2 + 87303 0.66 0.838544
Target:  5'- aGUcCGAGGAgGCGGCcACGCagacgaugagGUGGa -3'
miRNA:   3'- gCGaGCUCCUgCGCCGcUGCGa---------CGCC- -5'
9049 3' -61 NC_002512.2 + 7453 0.66 0.815066
Target:  5'- gGCcCGGGGGaagcCGCGGCG-CgGCUGcCGGc -3'
miRNA:   3'- gCGaGCUCCU----GCGCCGCuG-CGAC-GCC- -5'
9049 3' -61 NC_002512.2 + 111003 0.66 0.830871
Target:  5'- cCGCUCGAGGAagaggGUGGUGuCGCaguccaGaCGGg -3'
miRNA:   3'- -GCGAGCUCCUg----CGCCGCuGCGa-----C-GCC- -5'
9049 3' -61 NC_002512.2 + 47896 0.66 0.841568
Target:  5'- ---cCGAGGAcgcCGCcaccuacgugcggauGGUGACGUUGCGGu -3'
miRNA:   3'- gcgaGCUCCU---GCG---------------CCGCUGCGACGCC- -5'
9049 3' -61 NC_002512.2 + 40032 0.66 0.830871
Target:  5'- aCGCgcgaCGAGGuuGCGGaCGuuuCGCccGCGGg -3'
miRNA:   3'- -GCGa---GCUCCugCGCC-GCu--GCGa-CGCC- -5'
9049 3' -61 NC_002512.2 + 113739 0.66 0.815066
Target:  5'- gGCUCGGGGAUGuuGCcGAccacgauaCGCgGCGGc -3'
miRNA:   3'- gCGAGCUCCUGCgcCG-CU--------GCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 15395 0.66 0.830871
Target:  5'- gGCgaucCGcAGGAgGCGGaaGACGCcGCGGu -3'
miRNA:   3'- gCGa---GC-UCCUgCGCCg-CUGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 102443 0.66 0.838544
Target:  5'- uGUgacggaGAGGACGCGGCGGagGUUcGCGa -3'
miRNA:   3'- gCGag----CUCCUGCGCCGCUg-CGA-CGCc -5'
9049 3' -61 NC_002512.2 + 128606 0.66 0.845312
Target:  5'- gGCUCGAGGAacugaagaucaucCGCcuGGCcugucuccuGACGCUGggcCGGg -3'
miRNA:   3'- gCGAGCUCCU-------------GCG--CCG---------CUGCGAC---GCC- -5'
9049 3' -61 NC_002512.2 + 97119 0.66 0.818274
Target:  5'- uGUUCGAGGGagaccuucgcccgccUGCGGgaCGACGCcgcgcugcgccUGCGGc -3'
miRNA:   3'- gCGAGCUCCU---------------GCGCC--GCUGCG-----------ACGCC- -5'
9049 3' -61 NC_002512.2 + 169013 0.66 0.838544
Target:  5'- gGCUCGGcgauccGGGCG-GGCGucCGCgaGCGGc -3'
miRNA:   3'- gCGAGCU------CCUGCgCCGCu-GCGa-CGCC- -5'
9049 3' -61 NC_002512.2 + 133584 0.66 0.815066
Target:  5'- cCGC-CGGGGACccgaGCGGgcCGGCcucCUGCGGa -3'
miRNA:   3'- -GCGaGCUCCUG----CGCC--GCUGc--GACGCC- -5'
9049 3' -61 NC_002512.2 + 108595 0.66 0.806946
Target:  5'- gGCccCGGGGA-GCGGCGGC-C-GCGGg -3'
miRNA:   3'- gCGa-GCUCCUgCGCCGCUGcGaCGCC- -5'
9049 3' -61 NC_002512.2 + 104774 0.66 0.846055
Target:  5'- cCGgUCGGacGGcGCGUGGCGggguccGCGCgcgGCGGg -3'
miRNA:   3'- -GCgAGCU--CC-UGCGCCGC------UGCGa--CGCC- -5'
9049 3' -61 NC_002512.2 + 28251 0.66 0.806946
Target:  5'- uCGCgccgCGAGuACGaCGGCGccuaccgcucgGCGCUGgCGGa -3'
miRNA:   3'- -GCGa---GCUCcUGC-GCCGC-----------UGCGAC-GCC- -5'
9049 3' -61 NC_002512.2 + 21063 0.66 0.806946
Target:  5'- gCGCgUGAGGGCGCacgGGCGGCggucccGCUcCGGg -3'
miRNA:   3'- -GCGaGCUCCUGCG---CCGCUG------CGAcGCC- -5'
9049 3' -61 NC_002512.2 + 71771 0.66 0.838544
Target:  5'- uGC-CGAGGAaGCGGuUGugGaaGCGGu -3'
miRNA:   3'- gCGaGCUCCUgCGCC-GCugCgaCGCC- -5'
9049 3' -61 NC_002512.2 + 31811 0.66 0.806946
Target:  5'- aCGC-CG-GGGCGCGGUcgagggGACGC-GCGa -3'
miRNA:   3'- -GCGaGCuCCUGCGCCG------CUGCGaCGCc -5'
9049 3' -61 NC_002512.2 + 74638 0.66 0.830871
Target:  5'- aGC-CGucGACGCcGCGACGg-GCGGg -3'
miRNA:   3'- gCGaGCucCUGCGcCGCUGCgaCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.