miRNA display CGI


Results 1 - 20 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9049 3' -61 NC_002512.2 + 113739 0.66 0.815066
Target:  5'- gGCUCGGGGAUGuuGCcGAccacgauaCGCgGCGGc -3'
miRNA:   3'- gCGAGCUCCUGCgcCG-CU--------GCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 138297 0.66 0.838544
Target:  5'- aGCUCGuGGugcCGCGcGCGcuCGUaGCGGa -3'
miRNA:   3'- gCGAGCuCCu--GCGC-CGCu-GCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 21063 0.66 0.806946
Target:  5'- gCGCgUGAGGGCGCacgGGCGGCggucccGCUcCGGg -3'
miRNA:   3'- -GCGaGCUCCUGCG---CCGCUG------CGAcGCC- -5'
9049 3' -61 NC_002512.2 + 10471 0.66 0.806946
Target:  5'- cCGC-CGccccGGGCGUgGGCGuCGCgGCGGg -3'
miRNA:   3'- -GCGaGCu---CCUGCG-CCGCuGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 108595 0.66 0.806946
Target:  5'- gGCccCGGGGA-GCGGCGGC-C-GCGGg -3'
miRNA:   3'- gCGa-GCUCCUgCGCCGCUGcGaCGCC- -5'
9049 3' -61 NC_002512.2 + 59223 0.66 0.830095
Target:  5'- aCGCUcacccgaCGAGGAaacCGCaGGCcgaGGCGCcgGCGGa -3'
miRNA:   3'- -GCGA-------GCUCCU---GCG-CCG---CUGCGa-CGCC- -5'
9049 3' -61 NC_002512.2 + 136193 0.66 0.806946
Target:  5'- uCGC-CG-GGAuCGCGuCGACGCcgGCGGc -3'
miRNA:   3'- -GCGaGCuCCU-GCGCcGCUGCGa-CGCC- -5'
9049 3' -61 NC_002512.2 + 7453 0.66 0.815066
Target:  5'- gGCcCGGGGGaagcCGCGGCG-CgGCUGcCGGc -3'
miRNA:   3'- gCGaGCUCCU----GCGCCGCuG-CGAC-GCC- -5'
9049 3' -61 NC_002512.2 + 31811 0.66 0.806946
Target:  5'- aCGC-CG-GGGCGCGGUcgagggGACGC-GCGa -3'
miRNA:   3'- -GCGaGCuCCUGCGCCG------CUGCGaCGCc -5'
9049 3' -61 NC_002512.2 + 133584 0.66 0.815066
Target:  5'- cCGC-CGGGGACccgaGCGGgcCGGCcucCUGCGGa -3'
miRNA:   3'- -GCGaGCUCCUG----CGCC--GCUGc--GACGCC- -5'
9049 3' -61 NC_002512.2 + 152294 0.66 0.838544
Target:  5'- gGCgauccgCGAGGGacCGCucGGCGugGCU-CGGa -3'
miRNA:   3'- gCGa-----GCUCCU--GCG--CCGCugCGAcGCC- -5'
9049 3' -61 NC_002512.2 + 97119 0.66 0.818274
Target:  5'- uGUUCGAGGGagaccuucgcccgccUGCGGgaCGACGCcgcgcugcgccUGCGGc -3'
miRNA:   3'- gCGAGCUCCU---------------GCGCC--GCUGCG-----------ACGCC- -5'
9049 3' -61 NC_002512.2 + 82686 0.66 0.815066
Target:  5'- cCGCUCG-GGcUGuCGGCGuccguGCGCggcGCGGg -3'
miRNA:   3'- -GCGAGCuCCuGC-GCCGC-----UGCGa--CGCC- -5'
9049 3' -61 NC_002512.2 + 87303 0.66 0.838544
Target:  5'- aGUcCGAGGAgGCGGCcACGCagacgaugagGUGGa -3'
miRNA:   3'- gCGaGCUCCUgCGCCGcUGCGa---------CGCC- -5'
9049 3' -61 NC_002512.2 + 75244 0.66 0.805305
Target:  5'- uCGCUCG-GGACgGCGGUuuuugaaaaagcGCGCgaGCGGg -3'
miRNA:   3'- -GCGAGCuCCUG-CGCCGc-----------UGCGa-CGCC- -5'
9049 3' -61 NC_002512.2 + 15395 0.66 0.830871
Target:  5'- gGCgaucCGcAGGAgGCGGaaGACGCcGCGGu -3'
miRNA:   3'- gCGa---GC-UCCUgCGCCg-CUGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 71771 0.66 0.838544
Target:  5'- uGC-CGAGGAaGCGGuUGugGaaGCGGu -3'
miRNA:   3'- gCGaGCUCCUgCGCC-GCugCgaCGCC- -5'
9049 3' -61 NC_002512.2 + 28251 0.66 0.806946
Target:  5'- uCGCgccgCGAGuACGaCGGCGccuaccgcucgGCGCUGgCGGa -3'
miRNA:   3'- -GCGa---GCUCcUGC-GCCGC-----------UGCGAC-GCC- -5'
9049 3' -61 NC_002512.2 + 40032 0.66 0.830871
Target:  5'- aCGCgcgaCGAGGuuGCGGaCGuuuCGCccGCGGg -3'
miRNA:   3'- -GCGa---GCUCCugCGCC-GCu--GCGa-CGCC- -5'
9049 3' -61 NC_002512.2 + 18950 0.66 0.838544
Target:  5'- gGcCUCGGGGcggacugcauCGCGGCGAUGaUGcCGGa -3'
miRNA:   3'- gC-GAGCUCCu---------GCGCCGCUGCgAC-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.