miRNA display CGI


Results 1 - 20 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9049 3' -61 NC_002512.2 + 54679 0.74 0.4027
Target:  5'- gCGgaCGGuGGACGCGGCGAugaaCGC-GCGGg -3'
miRNA:   3'- -GCgaGCU-CCUGCGCCGCU----GCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 82357 0.76 0.314885
Target:  5'- gGCgugCGGGGGCGgcggagGGUGAUGCUGCGGc -3'
miRNA:   3'- gCGa--GCUCCUGCg-----CCGCUGCGACGCC- -5'
9049 3' -61 NC_002512.2 + 11413 0.75 0.363533
Target:  5'- cCGCgggaCGAGGAgaugaccgcggucCGCGGgGACGCcGCGGa -3'
miRNA:   3'- -GCGa---GCUCCU-------------GCGCCgCUGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 3052 0.74 0.371002
Target:  5'- cCGcCUUGAcggcggcGGACGCGGCGGCgGCgGCGGc -3'
miRNA:   3'- -GC-GAGCU-------CCUGCGCCGCUG-CGaCGCC- -5'
9049 3' -61 NC_002512.2 + 60795 0.74 0.371755
Target:  5'- cCGCgaggaCGAGGACGCGggccGCGACGCcgccgccGCGGa -3'
miRNA:   3'- -GCGa----GCUCCUGCGC----CGCUGCGa------CGCC- -5'
9049 3' -61 NC_002512.2 + 108306 0.74 0.379338
Target:  5'- aGCUCGGuGugGUccauGGCGGCGCgcgGCGGg -3'
miRNA:   3'- gCGAGCUcCugCG----CCGCUGCGa--CGCC- -5'
9049 3' -61 NC_002512.2 + 30412 0.74 0.379338
Target:  5'- aCGgaCGGGGACGCgGGCGuCGUcGCGGc -3'
miRNA:   3'- -GCgaGCUCCUGCG-CCGCuGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 135894 0.74 0.379338
Target:  5'- aGUUCGAGGACGCGuucGCGgACGCgcaGCGa -3'
miRNA:   3'- gCGAGCUCCUGCGC---CGC-UGCGa--CGCc -5'
9049 3' -61 NC_002512.2 + 45406 0.74 0.387024
Target:  5'- uCGCUCGugcGGGCGCucgacGGCGGCGCcggccGCGGc -3'
miRNA:   3'- -GCGAGCu--CCUGCG-----CCGCUGCGa----CGCC- -5'
9049 3' -61 NC_002512.2 + 16197 0.76 0.314885
Target:  5'- aGUUCGAGGAcCGCgGGCGACGC--CGGg -3'
miRNA:   3'- gCGAGCUCCU-GCG-CCGCUGCGacGCC- -5'
9049 3' -61 NC_002512.2 + 123675 0.76 0.308257
Target:  5'- gGCUCGGGGAagcgguccguCGCGGCGgggcguugGCGCaGCGGu -3'
miRNA:   3'- gCGAGCUCCU----------GCGCCGC--------UGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 129093 0.76 0.289014
Target:  5'- ---cCGAGGACG-GGCGGCGuCUGCGGc -3'
miRNA:   3'- gcgaGCUCCUGCgCCGCUGC-GACGCC- -5'
9049 3' -61 NC_002512.2 + 101643 0.81 0.152684
Target:  5'- cCGCUCGAGGggaGCGCGGCGGC-C-GCGGa -3'
miRNA:   3'- -GCGAGCUCC---UGCGCCGCUGcGaCGCC- -5'
9049 3' -61 NC_002512.2 + 14635 0.79 0.206796
Target:  5'- gCGCUUGAGGAagGCGGCGuaGCUGUGGg -3'
miRNA:   3'- -GCGAGCUCCUg-CGCCGCugCGACGCC- -5'
9049 3' -61 NC_002512.2 + 121888 0.78 0.221441
Target:  5'- uCGCg-GGGGACGCucGGCGACGC-GCGGg -3'
miRNA:   3'- -GCGagCUCCUGCG--CCGCUGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 108999 0.78 0.242333
Target:  5'- uGCUCGucGGCGcCGGCGGCGUcguccUGCGGa -3'
miRNA:   3'- gCGAGCucCUGC-GCCGCUGCG-----ACGCC- -5'
9049 3' -61 NC_002512.2 + 5894 0.77 0.259059
Target:  5'- uCGCUCGuGGACgGCGG-GGCGC-GCGGg -3'
miRNA:   3'- -GCGAGCuCCUG-CGCCgCUGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 43600 0.77 0.264841
Target:  5'- uCGCggaCGAGGACGCGGag--GCUGCGGa -3'
miRNA:   3'- -GCGa--GCUCCUGCGCCgcugCGACGCC- -5'
9049 3' -61 NC_002512.2 + 108417 0.77 0.276716
Target:  5'- aGgaCGGGGACgGCGGCgGGCGCgggGCGGa -3'
miRNA:   3'- gCgaGCUCCUG-CGCCG-CUGCGa--CGCC- -5'
9049 3' -61 NC_002512.2 + 131026 0.76 0.289014
Target:  5'- gCGCUCGAGGGCGuCGGgGcCGCgGgGGa -3'
miRNA:   3'- -GCGAGCUCCUGC-GCCgCuGCGaCgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.