Results 1 - 20 of 313 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9049 | 3' | -61 | NC_002512.2 | + | 197901 | 0.66 | 0.823043 |
Target: 5'- -uCUCGGGGAgGgGGgGACGggacgUGCGGa -3' miRNA: 3'- gcGAGCUCCUgCgCCgCUGCg----ACGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 141273 | 0.66 | 0.846055 |
Target: 5'- aCGUUCGucccGACGcCGGCcGCGCgcacgGCGGc -3' miRNA: 3'- -GCGAGCuc--CUGC-GCCGcUGCGa----CGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 128606 | 0.66 | 0.845312 |
Target: 5'- gGCUCGAGGAacugaagaucaucCGCcuGGCcugucuccuGACGCUGggcCGGg -3' miRNA: 3'- gCGAGCUCCU-------------GCG--CCG---------CUGCGAC---GCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 228245 | 0.66 | 0.830871 |
Target: 5'- gGCgaaCGugccGGACGCGGgGGCGaCUgaccGCGGa -3' miRNA: 3'- gCGa--GCu---CCUGCGCCgCUGC-GA----CGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 219793 | 0.66 | 0.830871 |
Target: 5'- gGC-CGGGGACacagauaGGgGACGC-GCGGg -3' miRNA: 3'- gCGaGCUCCUGcg-----CCgCUGCGaCGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 207511 | 0.66 | 0.838544 |
Target: 5'- cCGCgaccgacgaCGAGGACGgGGCcgcguccuccCGCUGCGa -3' miRNA: 3'- -GCGa--------GCUCCUGCgCCGcu--------GCGACGCc -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 102684 | 0.66 | 0.837784 |
Target: 5'- cCGCUguccgggGAGGACGUGGCugagcguGACGUuagugGCGGc -3' miRNA: 3'- -GCGAg------CUCCUGCGCCG-------CUGCGa----CGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 111003 | 0.66 | 0.830871 |
Target: 5'- cCGCUCGAGGAagaggGUGGUGuCGCaguccaGaCGGg -3' miRNA: 3'- -GCGAGCUCCUg----CGCCGCuGCGa-----C-GCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 125604 | 0.66 | 0.823043 |
Target: 5'- cCGC-CGccGGACGCGaGaaaGACGCcgGCGGc -3' miRNA: 3'- -GCGaGCu-CCUGCGC-Cg--CUGCGa-CGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 158287 | 0.66 | 0.822252 |
Target: 5'- aGCUgGAGGGCGUGcCGGCccccaagGCcGCGGu -3' miRNA: 3'- gCGAgCUCCUGCGCcGCUG-------CGaCGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 145551 | 1.09 | 0.002012 |
Target: 5'- cCGCUCGAGGACGCGGCGACGCUGCGGc -3' miRNA: 3'- -GCGAGCUCCUGCGCCGCUGCGACGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 94785 | 0.66 | 0.838544 |
Target: 5'- aGUUCuccAGGGCGCGcaCGACGCggagacGCGGg -3' miRNA: 3'- gCGAGc--UCCUGCGCc-GCUGCGa-----CGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 99885 | 0.66 | 0.838544 |
Target: 5'- gCGCggacaCGGGcACGCGGCGccgccgGCGCUcccgGCGGu -3' miRNA: 3'- -GCGa----GCUCcUGCGCCGC------UGCGA----CGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 183455 | 0.66 | 0.828539 |
Target: 5'- gCGgUCGAGaACGuCGGCGcCGCcaccaaggccgugcUGCGGg -3' miRNA: 3'- -GCgAGCUCcUGC-GCCGCuGCG--------------ACGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 136062 | 0.66 | 0.825407 |
Target: 5'- uGCUacCGAgaaccugGGugGCGGCGuuccugcugcugcucGCGCUGgCGGc -3' miRNA: 3'- gCGA--GCU-------CCugCGCCGC---------------UGCGAC-GCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 169013 | 0.66 | 0.838544 |
Target: 5'- gGCUCGGcgauccGGGCG-GGCGucCGCgaGCGGc -3' miRNA: 3'- gCGAGCU------CCUGCgCCGCu-GCGa-CGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 150036 | 0.66 | 0.823043 |
Target: 5'- aGgaCGAGGGgGcCGGgGACGaCgggGCGGg -3' miRNA: 3'- gCgaGCUCCUgC-GCCgCUGC-Ga--CGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 192579 | 0.66 | 0.815066 |
Target: 5'- gGcCUCGGagcGGACcgucccgcugcuGCGGCGcGCGCgGCGGg -3' miRNA: 3'- gC-GAGCU---CCUG------------CGCCGC-UGCGaCGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 74638 | 0.66 | 0.830871 |
Target: 5'- aGC-CGucGACGCcGCGACGg-GCGGg -3' miRNA: 3'- gCGaGCucCUGCGcCGCUGCgaCGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 195789 | 0.66 | 0.830871 |
Target: 5'- uGgaCGuGGGCGUGuuGCucCGCUGCGGg -3' miRNA: 3'- gCgaGCuCCUGCGC--CGcuGCGACGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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