miRNA display CGI


Results 1 - 20 of 313 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9049 3' -61 NC_002512.2 + 141273 0.66 0.846055
Target:  5'- aCGUUCGucccGACGcCGGCcGCGCgcacgGCGGc -3'
miRNA:   3'- -GCGAGCuc--CUGC-GCCGcUGCGa----CGCC- -5'
9049 3' -61 NC_002512.2 + 150036 0.66 0.823043
Target:  5'- aGgaCGAGGGgGcCGGgGACGaCgggGCGGg -3'
miRNA:   3'- gCgaGCUCCUgC-GCCgCUGC-Ga--CGCC- -5'
9049 3' -61 NC_002512.2 + 192579 0.66 0.815066
Target:  5'- gGcCUCGGagcGGACcgucccgcugcuGCGGCGcGCGCgGCGGg -3'
miRNA:   3'- gC-GAGCU---CCUG------------CGCCGC-UGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 145551 1.09 0.002012
Target:  5'- cCGCUCGAGGACGCGGCGACGCUGCGGc -3'
miRNA:   3'- -GCGAGCUCCUGCGCCGCUGCGACGCC- -5'
9049 3' -61 NC_002512.2 + 94785 0.66 0.838544
Target:  5'- aGUUCuccAGGGCGCGcaCGACGCggagacGCGGg -3'
miRNA:   3'- gCGAGc--UCCUGCGCc-GCUGCGa-----CGCC- -5'
9049 3' -61 NC_002512.2 + 169013 0.66 0.838544
Target:  5'- gGCUCGGcgauccGGGCG-GGCGucCGCgaGCGGc -3'
miRNA:   3'- gCGAGCU------CCUGCgCCGCu-GCGa-CGCC- -5'
9049 3' -61 NC_002512.2 + 74638 0.66 0.830871
Target:  5'- aGC-CGucGACGCcGCGACGg-GCGGg -3'
miRNA:   3'- gCGaGCucCUGCGcCGCUGCgaCGCC- -5'
9049 3' -61 NC_002512.2 + 111003 0.66 0.830871
Target:  5'- cCGCUCGAGGAagaggGUGGUGuCGCaguccaGaCGGg -3'
miRNA:   3'- -GCGAGCUCCUg----CGCCGCuGCGa-----C-GCC- -5'
9049 3' -61 NC_002512.2 + 195789 0.66 0.830871
Target:  5'- uGgaCGuGGGCGUGuuGCucCGCUGCGGg -3'
miRNA:   3'- gCgaGCuCCUGCGC--CGcuGCGACGCC- -5'
9049 3' -61 NC_002512.2 + 119135 0.66 0.823043
Target:  5'- gCGCUaccGGGACGCGaCGAuccUGCUGcCGGa -3'
miRNA:   3'- -GCGAgc-UCCUGCGCcGCU---GCGAC-GCC- -5'
9049 3' -61 NC_002512.2 + 136062 0.66 0.825407
Target:  5'- uGCUacCGAgaaccugGGugGCGGCGuuccugcugcugcucGCGCUGgCGGc -3'
miRNA:   3'- gCGA--GCU-------CCugCGCCGC---------------UGCGAC-GCC- -5'
9049 3' -61 NC_002512.2 + 219793 0.66 0.830871
Target:  5'- gGC-CGGGGACacagauaGGgGACGC-GCGGg -3'
miRNA:   3'- gCGaGCUCCUGcg-----CCgCUGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 128606 0.66 0.845312
Target:  5'- gGCUCGAGGAacugaagaucaucCGCcuGGCcugucuccuGACGCUGggcCGGg -3'
miRNA:   3'- gCGAGCUCCU-------------GCG--CCG---------CUGCGAC---GCC- -5'
9049 3' -61 NC_002512.2 + 125604 0.66 0.823043
Target:  5'- cCGC-CGccGGACGCGaGaaaGACGCcgGCGGc -3'
miRNA:   3'- -GCGaGCu-CCUGCGC-Cg--CUGCGa-CGCC- -5'
9049 3' -61 NC_002512.2 + 207511 0.66 0.838544
Target:  5'- cCGCgaccgacgaCGAGGACGgGGCcgcguccuccCGCUGCGa -3'
miRNA:   3'- -GCGa--------GCUCCUGCgCCGcu--------GCGACGCc -5'
9049 3' -61 NC_002512.2 + 228245 0.66 0.830871
Target:  5'- gGCgaaCGugccGGACGCGGgGGCGaCUgaccGCGGa -3'
miRNA:   3'- gCGa--GCu---CCUGCGCCgCUGC-GA----CGCC- -5'
9049 3' -61 NC_002512.2 + 197901 0.66 0.823043
Target:  5'- -uCUCGGGGAgGgGGgGACGggacgUGCGGa -3'
miRNA:   3'- gcGAGCUCCUgCgCCgCUGCg----ACGCC- -5'
9049 3' -61 NC_002512.2 + 158287 0.66 0.822252
Target:  5'- aGCUgGAGGGCGUGcCGGCccccaagGCcGCGGu -3'
miRNA:   3'- gCGAgCUCCUGCGCcGCUG-------CGaCGCC- -5'
9049 3' -61 NC_002512.2 + 99885 0.66 0.838544
Target:  5'- gCGCggacaCGGGcACGCGGCGccgccgGCGCUcccgGCGGu -3'
miRNA:   3'- -GCGa----GCUCcUGCGCCGC------UGCGA----CGCC- -5'
9049 3' -61 NC_002512.2 + 102684 0.66 0.837784
Target:  5'- cCGCUguccgggGAGGACGUGGCugagcguGACGUuagugGCGGc -3'
miRNA:   3'- -GCGAg------CUCCUGCGCCG-------CUGCGa----CGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.