miRNA display CGI


Results 21 - 40 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9049 3' -61 NC_002512.2 + 141273 0.66 0.846055
Target:  5'- aCGUUCGucccGACGcCGGCcGCGCgcacgGCGGc -3'
miRNA:   3'- -GCGAGCuc--CUGC-GCCGcUGCGa----CGCC- -5'
9049 3' -61 NC_002512.2 + 111699 0.67 0.79869
Target:  5'- gGcCUCGGGGuCGCGGaUGACGaCggagucuccgGCGGg -3'
miRNA:   3'- gC-GAGCUCCuGCGCC-GCUGC-Ga---------CGCC- -5'
9049 3' -61 NC_002512.2 + 191034 0.67 0.79869
Target:  5'- uGCgaggCG-GGGCGCGGCGcACGUggacCGGu -3'
miRNA:   3'- gCGa---GCuCCUGCGCCGC-UGCGac--GCC- -5'
9049 3' -61 NC_002512.2 + 100969 0.66 0.815066
Target:  5'- uCGCugUCGAGGGCGggaaaGGCGAccaCGUUGUGu -3'
miRNA:   3'- -GCG--AGCUCCUGCg----CCGCU---GCGACGCc -5'
9049 3' -61 NC_002512.2 + 183455 0.66 0.828539
Target:  5'- gCGgUCGAGaACGuCGGCGcCGCcaccaaggccgugcUGCGGg -3'
miRNA:   3'- -GCgAGCUCcUGC-GCCGCuGCG--------------ACGCC- -5'
9049 3' -61 NC_002512.2 + 219265 0.67 0.781797
Target:  5'- uGCUCGuccggcAGGGgGCGGacgcCGACGCcGUGGc -3'
miRNA:   3'- gCGAGC------UCCUgCGCC----GCUGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 144525 0.67 0.790304
Target:  5'- gGUccgCGuGGGCGCGGUccucgugugcGACGC-GCGGa -3'
miRNA:   3'- gCGa--GCuCCUGCGCCG----------CUGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 111003 0.66 0.830871
Target:  5'- cCGCUCGAGGAagaggGUGGUGuCGCaguccaGaCGGg -3'
miRNA:   3'- -GCGAGCUCCUg----CGCCGCuGCGa-----C-GCC- -5'
9049 3' -61 NC_002512.2 + 157128 0.66 0.806946
Target:  5'- gGCgUCGGGGGuCgGCGGCGGgccCGggGCGGg -3'
miRNA:   3'- gCG-AGCUCCU-G-CGCCGCU---GCgaCGCC- -5'
9049 3' -61 NC_002512.2 + 128849 0.66 0.806946
Target:  5'- cCGCUCGGGcGccGCGCGGgcccUGGUGCUGCGc -3'
miRNA:   3'- -GCGAGCUC-C--UGCGCC----GCUGCGACGCc -5'
9049 3' -61 NC_002512.2 + 102684 0.66 0.837784
Target:  5'- cCGCUguccgggGAGGACGUGGCugagcguGACGUuagugGCGGc -3'
miRNA:   3'- -GCGAg------CUCCUGCGCCG-------CUGCGa----CGCC- -5'
9049 3' -61 NC_002512.2 + 169013 0.66 0.838544
Target:  5'- gGCUCGGcgauccGGGCG-GGCGucCGCgaGCGGc -3'
miRNA:   3'- gCGAGCU------CCUGCgCCGCu-GCGa-CGCC- -5'
9049 3' -61 NC_002512.2 + 129151 0.67 0.769693
Target:  5'- uGUUCGcguuccugauccAGGACuaccugacguucaCGGgGACGCUGCGGa -3'
miRNA:   3'- gCGAGC------------UCCUGc------------GCCgCUGCGACGCC- -5'
9049 3' -61 NC_002512.2 + 149415 0.67 0.773173
Target:  5'- gGCcgCGAGGGgacCGCGGCGgGgGCgggcGCGGg -3'
miRNA:   3'- gCGa-GCUCCU---GCGCCGC-UgCGa---CGCC- -5'
9049 3' -61 NC_002512.2 + 96206 0.67 0.79869
Target:  5'- gGCcgCGAGGuCGgccaCGGCGGCcGCgGCGGc -3'
miRNA:   3'- gCGa-GCUCCuGC----GCCGCUG-CGaCGCC- -5'
9049 3' -61 NC_002512.2 + 197901 0.66 0.823043
Target:  5'- -uCUCGGGGAgGgGGgGACGggacgUGCGGa -3'
miRNA:   3'- gcGAGCUCCUgCgCCgCUGCg----ACGCC- -5'
9049 3' -61 NC_002512.2 + 136062 0.66 0.825407
Target:  5'- uGCUacCGAgaaccugGGugGCGGCGuuccugcugcugcucGCGCUGgCGGc -3'
miRNA:   3'- gCGA--GCU-------CCugCGCCGC---------------UGCGAC-GCC- -5'
9049 3' -61 NC_002512.2 + 94785 0.66 0.838544
Target:  5'- aGUUCuccAGGGCGCGcaCGACGCggagacGCGGg -3'
miRNA:   3'- gCGAGc--UCCUGCGCc-GCUGCGa-----CGCC- -5'
9049 3' -61 NC_002512.2 + 222304 0.66 0.806946
Target:  5'- cCGCUgcCGccGGAgGCGGUaccgGAgGCUGCGGc -3'
miRNA:   3'- -GCGA--GCu-CCUgCGCCG----CUgCGACGCC- -5'
9049 3' -61 NC_002512.2 + 132011 0.66 0.806946
Target:  5'- gCGCcggGGGGACcucgGCGGCGACGUcGuCGGc -3'
miRNA:   3'- -GCGag-CUCCUG----CGCCGCUGCGaC-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.