miRNA display CGI


Results 41 - 60 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9049 3' -61 NC_002512.2 + 102684 0.66 0.837784
Target:  5'- cCGCUguccgggGAGGACGUGGCugagcguGACGUuagugGCGGc -3'
miRNA:   3'- -GCGAg------CUCCUGCGCCG-------CUGCGa----CGCC- -5'
9049 3' -61 NC_002512.2 + 129151 0.67 0.769693
Target:  5'- uGUUCGcguuccugauccAGGACuaccugacguucaCGGgGACGCUGCGGa -3'
miRNA:   3'- gCGAGC------------UCCUGc------------GCCgCUGCGACGCC- -5'
9049 3' -61 NC_002512.2 + 138 0.68 0.73767
Target:  5'- aCGC-CGGGGAgccggGCGG-GGCGCcgGCGGa -3'
miRNA:   3'- -GCGaGCUCCUg----CGCCgCUGCGa-CGCC- -5'
9049 3' -61 NC_002512.2 + 229541 0.68 0.73767
Target:  5'- aCGC-CGGGGAgccggGCGG-GGCGCcgGCGGa -3'
miRNA:   3'- -GCGaGCUCCUg----CGCCgCUGCGa-CGCC- -5'
9049 3' -61 NC_002512.2 + 149415 0.67 0.773173
Target:  5'- gGCcgCGAGGGgacCGCGGCGgGgGCgggcGCGGg -3'
miRNA:   3'- gCGa-GCUCCU---GCGCCGC-UgCGa---CGCC- -5'
9049 3' -61 NC_002512.2 + 197901 0.66 0.823043
Target:  5'- -uCUCGGGGAgGgGGgGACGggacgUGCGGa -3'
miRNA:   3'- gcGAGCUCCUgCgCCgCUGCg----ACGCC- -5'
9049 3' -61 NC_002512.2 + 169013 0.66 0.838544
Target:  5'- gGCUCGGcgauccGGGCG-GGCGucCGCgaGCGGc -3'
miRNA:   3'- gCGAGCU------CCUGCgCCGCu-GCGa-CGCC- -5'
9049 3' -61 NC_002512.2 + 94785 0.66 0.838544
Target:  5'- aGUUCuccAGGGCGCGcaCGACGCggagacGCGGg -3'
miRNA:   3'- gCGAGc--UCCUGCGCc-GCUGCGa-----CGCC- -5'
9049 3' -61 NC_002512.2 + 222304 0.66 0.806946
Target:  5'- cCGCUgcCGccGGAgGCGGUaccgGAgGCUGCGGc -3'
miRNA:   3'- -GCGA--GCu-CCUgCGCCG----CUgCGACGCC- -5'
9049 3' -61 NC_002512.2 + 111699 0.67 0.79869
Target:  5'- gGcCUCGGGGuCGCGGaUGACGaCggagucuccgGCGGg -3'
miRNA:   3'- gC-GAGCUCCuGCGCC-GCUGC-Ga---------CGCC- -5'
9049 3' -61 NC_002512.2 + 96206 0.67 0.79869
Target:  5'- gGCcgCGAGGuCGgccaCGGCGGCcGCgGCGGc -3'
miRNA:   3'- gCGa-GCUCCuGC----GCCGCUG-CGaCGCC- -5'
9049 3' -61 NC_002512.2 + 192579 0.66 0.815066
Target:  5'- gGcCUCGGagcGGACcgucccgcugcuGCGGCGcGCGCgGCGGg -3'
miRNA:   3'- gC-GAGCU---CCUG------------CGCCGC-UGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 228245 0.66 0.830871
Target:  5'- gGCgaaCGugccGGACGCGGgGGCGaCUgaccGCGGa -3'
miRNA:   3'- gCGa--GCu---CCUGCGCCgCUGC-GA----CGCC- -5'
9049 3' -61 NC_002512.2 + 154708 0.67 0.755609
Target:  5'- gGCgUCGAGcGGCGCGacggaaCGGCGUUGCGu -3'
miRNA:   3'- gCG-AGCUC-CUGCGCc-----GCUGCGACGCc -5'
9049 3' -61 NC_002512.2 + 107507 0.67 0.755609
Target:  5'- aCGCUCu-GGAUGacauCGGCGuagugcucgGCGUUGCGGg -3'
miRNA:   3'- -GCGAGcuCCUGC----GCCGC---------UGCGACGCC- -5'
9049 3' -61 NC_002512.2 + 147676 0.67 0.781797
Target:  5'- cCGCUUcccgccccggGAGGACGcCGGcCGACG--GCGGa -3'
miRNA:   3'- -GCGAG----------CUCCUGC-GCC-GCUGCgaCGCC- -5'
9049 3' -61 NC_002512.2 + 194710 0.68 0.73767
Target:  5'- -aCUgGAGGACGCGGaggggGGCGCgGCuGGu -3'
miRNA:   3'- gcGAgCUCCUGCGCCg----CUGCGaCG-CC- -5'
9049 3' -61 NC_002512.2 + 145551 1.09 0.002012
Target:  5'- cCGCUCGAGGACGCGGCGACGCUGCGGc -3'
miRNA:   3'- -GCGAGCUCCUGCGCCGCUGCGACGCC- -5'
9049 3' -61 NC_002512.2 + 213834 0.68 0.732224
Target:  5'- aGuCUCGAGG-CGCGGCGcggggagaagauccCGCUGCc- -3'
miRNA:   3'- gC-GAGCUCCuGCGCCGCu-------------GCGACGcc -5'
9049 3' -61 NC_002512.2 + 137535 0.68 0.746683
Target:  5'- uGCUCGcGucCGCGGCGACGgguucggucGCGGa -3'
miRNA:   3'- gCGAGCuCcuGCGCCGCUGCga-------CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.