Results 61 - 80 of 313 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9049 | 3' | -61 | NC_002512.2 | + | 229541 | 0.68 | 0.73767 |
Target: 5'- aCGC-CGGGGAgccggGCGG-GGCGCcgGCGGa -3' miRNA: 3'- -GCGaGCUCCUg----CGCCgCUGCGa-CGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 125604 | 0.66 | 0.823043 |
Target: 5'- cCGC-CGccGGACGCGaGaaaGACGCcgGCGGc -3' miRNA: 3'- -GCGaGCu-CCUGCGC-Cg--CUGCGa-CGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 219265 | 0.67 | 0.781797 |
Target: 5'- uGCUCGuccggcAGGGgGCGGacgcCGACGCcGUGGc -3' miRNA: 3'- gCGAGC------UCCUgCGCC----GCUGCGaCGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 161990 | 0.67 | 0.764442 |
Target: 5'- uCGCUCGuGGACcUGGUG-CGggaUGCGGa -3' miRNA: 3'- -GCGAGCuCCUGcGCCGCuGCg--ACGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 102283 | 0.67 | 0.764442 |
Target: 5'- gGCUCG-GcGCGCgucgaccgccagGGCGACGUcGCGGa -3' miRNA: 3'- gCGAGCuCcUGCG------------CCGCUGCGaCGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 219793 | 0.66 | 0.830871 |
Target: 5'- gGC-CGGGGACacagauaGGgGACGC-GCGGg -3' miRNA: 3'- gCGaGCUCCUGcg-----CCgCUGCGaCGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 100969 | 0.66 | 0.815066 |
Target: 5'- uCGCugUCGAGGGCGggaaaGGCGAccaCGUUGUGu -3' miRNA: 3'- -GCG--AGCUCCUGCg----CCGCU---GCGACGCc -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 191034 | 0.67 | 0.79869 |
Target: 5'- uGCgaggCG-GGGCGCGGCGcACGUggacCGGu -3' miRNA: 3'- gCGa---GCuCCUGCGCCGC-UGCGac--GCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 170355 | 0.67 | 0.790304 |
Target: 5'- cCGCgaucagCGuGGccagggccguGCGCGGCGccGCGCUGCa- -3' miRNA: 3'- -GCGa-----GCuCC----------UGCGCCGC--UGCGACGcc -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 128849 | 0.66 | 0.806946 |
Target: 5'- cCGCUCGGGcGccGCGCGGgcccUGGUGCUGCGc -3' miRNA: 3'- -GCGAGCUC-C--UGCGCC----GCUGCGACGCc -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 169013 | 0.66 | 0.838544 |
Target: 5'- gGCUCGGcgauccGGGCG-GGCGucCGCgaGCGGc -3' miRNA: 3'- gCGAGCU------CCUGCgCCGCu-GCGa-CGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 102684 | 0.66 | 0.837784 |
Target: 5'- cCGCUguccgggGAGGACGUGGCugagcguGACGUuagugGCGGc -3' miRNA: 3'- -GCGAg------CUCCUGCGCCG-------CUGCGa----CGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 138 | 0.68 | 0.73767 |
Target: 5'- aCGC-CGGGGAgccggGCGG-GGCGCcgGCGGa -3' miRNA: 3'- -GCGaGCUCCUg----CGCCgCUGCGa-CGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 217780 | 0.68 | 0.719416 |
Target: 5'- uCGC-CGGGGuCGCGGCcg-GCUGgCGGa -3' miRNA: 3'- -GCGaGCUCCuGCGCCGcugCGAC-GCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 131221 | 0.68 | 0.709263 |
Target: 5'- gCGCUCGAcgucgcggucggaGGcCGCGGUGGC-CUGCa- -3' miRNA: 3'- -GCGAGCU-------------CCuGCGCCGCUGcGACGcc -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 226717 | 0.69 | 0.69157 |
Target: 5'- aGCgacggGAGGcCGCgGGCGACGacgGCGGg -3' miRNA: 3'- gCGag---CUCCuGCG-CCGCUGCga-CGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 160833 | 0.68 | 0.719416 |
Target: 5'- aGCaggCGGGcGGC-CGGCGGCGCUG-GGc -3' miRNA: 3'- gCGa--GCUC-CUGcGCCGCUGCGACgCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 113065 | 0.68 | 0.73767 |
Target: 5'- cCGCaCGAGGGCcagGCGGuCGACGaUGCGc -3' miRNA: 3'- -GCGaGCUCCUG---CGCC-GCUGCgACGCc -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 200350 | 0.68 | 0.728579 |
Target: 5'- --gUCGGcGGACGgGGgGACGggGCGGg -3' miRNA: 3'- gcgAGCU-CCUGCgCCgCUGCgaCGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 213639 | 0.68 | 0.725837 |
Target: 5'- cCGC-CGcGGGCGaCGGCGACGacgacgaugacggagGCGGa -3' miRNA: 3'- -GCGaGCuCCUGC-GCCGCUGCga-------------CGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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