miRNA display CGI


Results 61 - 80 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9049 3' -61 NC_002512.2 + 229541 0.68 0.73767
Target:  5'- aCGC-CGGGGAgccggGCGG-GGCGCcgGCGGa -3'
miRNA:   3'- -GCGaGCUCCUg----CGCCgCUGCGa-CGCC- -5'
9049 3' -61 NC_002512.2 + 125604 0.66 0.823043
Target:  5'- cCGC-CGccGGACGCGaGaaaGACGCcgGCGGc -3'
miRNA:   3'- -GCGaGCu-CCUGCGC-Cg--CUGCGa-CGCC- -5'
9049 3' -61 NC_002512.2 + 219265 0.67 0.781797
Target:  5'- uGCUCGuccggcAGGGgGCGGacgcCGACGCcGUGGc -3'
miRNA:   3'- gCGAGC------UCCUgCGCC----GCUGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 161990 0.67 0.764442
Target:  5'- uCGCUCGuGGACcUGGUG-CGggaUGCGGa -3'
miRNA:   3'- -GCGAGCuCCUGcGCCGCuGCg--ACGCC- -5'
9049 3' -61 NC_002512.2 + 102283 0.67 0.764442
Target:  5'- gGCUCG-GcGCGCgucgaccgccagGGCGACGUcGCGGa -3'
miRNA:   3'- gCGAGCuCcUGCG------------CCGCUGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 219793 0.66 0.830871
Target:  5'- gGC-CGGGGACacagauaGGgGACGC-GCGGg -3'
miRNA:   3'- gCGaGCUCCUGcg-----CCgCUGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 100969 0.66 0.815066
Target:  5'- uCGCugUCGAGGGCGggaaaGGCGAccaCGUUGUGu -3'
miRNA:   3'- -GCG--AGCUCCUGCg----CCGCU---GCGACGCc -5'
9049 3' -61 NC_002512.2 + 191034 0.67 0.79869
Target:  5'- uGCgaggCG-GGGCGCGGCGcACGUggacCGGu -3'
miRNA:   3'- gCGa---GCuCCUGCGCCGC-UGCGac--GCC- -5'
9049 3' -61 NC_002512.2 + 170355 0.67 0.790304
Target:  5'- cCGCgaucagCGuGGccagggccguGCGCGGCGccGCGCUGCa- -3'
miRNA:   3'- -GCGa-----GCuCC----------UGCGCCGC--UGCGACGcc -5'
9049 3' -61 NC_002512.2 + 128849 0.66 0.806946
Target:  5'- cCGCUCGGGcGccGCGCGGgcccUGGUGCUGCGc -3'
miRNA:   3'- -GCGAGCUC-C--UGCGCC----GCUGCGACGCc -5'
9049 3' -61 NC_002512.2 + 169013 0.66 0.838544
Target:  5'- gGCUCGGcgauccGGGCG-GGCGucCGCgaGCGGc -3'
miRNA:   3'- gCGAGCU------CCUGCgCCGCu-GCGa-CGCC- -5'
9049 3' -61 NC_002512.2 + 102684 0.66 0.837784
Target:  5'- cCGCUguccgggGAGGACGUGGCugagcguGACGUuagugGCGGc -3'
miRNA:   3'- -GCGAg------CUCCUGCGCCG-------CUGCGa----CGCC- -5'
9049 3' -61 NC_002512.2 + 138 0.68 0.73767
Target:  5'- aCGC-CGGGGAgccggGCGG-GGCGCcgGCGGa -3'
miRNA:   3'- -GCGaGCUCCUg----CGCCgCUGCGa-CGCC- -5'
9049 3' -61 NC_002512.2 + 217780 0.68 0.719416
Target:  5'- uCGC-CGGGGuCGCGGCcg-GCUGgCGGa -3'
miRNA:   3'- -GCGaGCUCCuGCGCCGcugCGAC-GCC- -5'
9049 3' -61 NC_002512.2 + 131221 0.68 0.709263
Target:  5'- gCGCUCGAcgucgcggucggaGGcCGCGGUGGC-CUGCa- -3'
miRNA:   3'- -GCGAGCU-------------CCuGCGCCGCUGcGACGcc -5'
9049 3' -61 NC_002512.2 + 226717 0.69 0.69157
Target:  5'- aGCgacggGAGGcCGCgGGCGACGacgGCGGg -3'
miRNA:   3'- gCGag---CUCCuGCG-CCGCUGCga-CGCC- -5'
9049 3' -61 NC_002512.2 + 160833 0.68 0.719416
Target:  5'- aGCaggCGGGcGGC-CGGCGGCGCUG-GGc -3'
miRNA:   3'- gCGa--GCUC-CUGcGCCGCUGCGACgCC- -5'
9049 3' -61 NC_002512.2 + 113065 0.68 0.73767
Target:  5'- cCGCaCGAGGGCcagGCGGuCGACGaUGCGc -3'
miRNA:   3'- -GCGaGCUCCUG---CGCC-GCUGCgACGCc -5'
9049 3' -61 NC_002512.2 + 200350 0.68 0.728579
Target:  5'- --gUCGGcGGACGgGGgGACGggGCGGg -3'
miRNA:   3'- gcgAGCU-CCUGCgCCgCUGCgaCGCC- -5'
9049 3' -61 NC_002512.2 + 213639 0.68 0.725837
Target:  5'- cCGC-CGcGGGCGaCGGCGACGacgacgaugacggagGCGGa -3'
miRNA:   3'- -GCGaGCuCCUGC-GCCGCUGCga-------------CGCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.