miRNA display CGI


Results 61 - 80 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9049 3' -61 NC_002512.2 + 47362 0.69 0.682194
Target:  5'- uCGUUCacccaccGGACGCuGCGGCGC-GCGGa -3'
miRNA:   3'- -GCGAGcu-----CCUGCGcCGCUGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 47896 0.66 0.841568
Target:  5'- ---cCGAGGAcgcCGCcaccuacgugcggauGGUGACGUUGCGGu -3'
miRNA:   3'- gcgaGCUCCU---GCG---------------CCGCUGCGACGCC- -5'
9049 3' -61 NC_002512.2 + 47952 0.67 0.79869
Target:  5'- aGCcCGAGGAacgagGUGGCGGagGCcGCGGa -3'
miRNA:   3'- gCGaGCUCCUg----CGCCGCUg-CGaCGCC- -5'
9049 3' -61 NC_002512.2 + 48117 0.69 0.672782
Target:  5'- gCGCUgGAGGACGUGuG-GACGaacGCGGc -3'
miRNA:   3'- -GCGAgCUCCUGCGC-CgCUGCga-CGCC- -5'
9049 3' -61 NC_002512.2 + 49134 0.69 0.695309
Target:  5'- aCGCcaagaUCGcGGACGCGGUacaggccuaccagauGACGCUGaGGg -3'
miRNA:   3'- -GCG-----AGCuCCUGCGCCG---------------CUGCGACgCC- -5'
9049 3' -61 NC_002512.2 + 50979 0.68 0.728579
Target:  5'- aCGcCUCGGugacGGACGCGGagcugGACGCguucGUGGa -3'
miRNA:   3'- -GC-GAGCU----CCUGCGCCg----CUGCGa---CGCC- -5'
9049 3' -61 NC_002512.2 + 51155 0.71 0.52626
Target:  5'- aCGCUgGAcgccaucucgaaacuGGgccuggccagcaACGCGGCGgccGCGCUGCGGg -3'
miRNA:   3'- -GCGAgCU---------------CC------------UGCGCCGC---UGCGACGCC- -5'
9049 3' -61 NC_002512.2 + 51276 0.7 0.614999
Target:  5'- ---aCGuGGACGCGGCGACcgagucgGCgGCGGc -3'
miRNA:   3'- gcgaGCuCCUGCGCCGCUG-------CGaCGCC- -5'
9049 3' -61 NC_002512.2 + 52637 0.7 0.634917
Target:  5'- uGCggGAGGA-GCuggaGGCGACGgaGCGGg -3'
miRNA:   3'- gCGagCUCCUgCG----CCGCUGCgaCGCC- -5'
9049 3' -61 NC_002512.2 + 52721 0.67 0.773173
Target:  5'- aCGCg-GGGGagcagaagcGCGCGGaGACGCUGCa- -3'
miRNA:   3'- -GCGagCUCC---------UGCGCCgCUGCGACGcc -5'
9049 3' -61 NC_002512.2 + 54679 0.74 0.4027
Target:  5'- gCGgaCGGuGGACGCGGCGAugaaCGC-GCGGg -3'
miRNA:   3'- -GCgaGCU-CCUGCGCCGCU----GCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 55549 0.72 0.477939
Target:  5'- gCGgaCGAGGGCGCGGCGGaccccCGcCUGCu- -3'
miRNA:   3'- -GCgaGCUCCUGCGCCGCU-----GC-GACGcc -5'
9049 3' -61 NC_002512.2 + 57925 0.69 0.669952
Target:  5'- aGCgCGAGGACggcgaGCGggagauagacgggcGCGGCGCgGCGGg -3'
miRNA:   3'- gCGaGCUCCUG-----CGC--------------CGCUGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 58197 0.67 0.781797
Target:  5'- aCGCUgGugaguGGGCGCGGCGcgcaccccGCGC-GCGu -3'
miRNA:   3'- -GCGAgCu----CCUGCGCCGC--------UGCGaCGCc -5'
9049 3' -61 NC_002512.2 + 59223 0.66 0.830095
Target:  5'- aCGCUcacccgaCGAGGAaacCGCaGGCcgaGGCGCcgGCGGa -3'
miRNA:   3'- -GCGA-------GCUCCU---GCG-CCG---CUGCGa-CGCC- -5'
9049 3' -61 NC_002512.2 + 59294 0.68 0.709263
Target:  5'- uGCUCGAcggacucgggucgGGACaCGGCGACGgaggagaaCUGCGa -3'
miRNA:   3'- gCGAGCU-------------CCUGcGCCGCUGC--------GACGCc -5'
9049 3' -61 NC_002512.2 + 60795 0.74 0.371755
Target:  5'- cCGCgaggaCGAGGACGCGggccGCGACGCcgccgccGCGGa -3'
miRNA:   3'- -GCGa----GCUCCUGCGC----CGCUGCGa------CGCC- -5'
9049 3' -61 NC_002512.2 + 60844 0.72 0.486729
Target:  5'- gCGCcCGAGGAgaUGcCGGCGcCGCUcGCGGa -3'
miRNA:   3'- -GCGaGCUCCU--GC-GCCGCuGCGA-CGCC- -5'
9049 3' -61 NC_002512.2 + 65442 0.71 0.539095
Target:  5'- cCGC-CGAGGGCGCcgagcggcuucccGGCGACcugcaugGCgUGCGGg -3'
miRNA:   3'- -GCGaGCUCCUGCG-------------CCGCUG-------CG-ACGCC- -5'
9049 3' -61 NC_002512.2 + 66735 0.67 0.764442
Target:  5'- cCGUcaCGaAGGugGCGGUGAgGCUaCGGg -3'
miRNA:   3'- -GCGa-GC-UCCugCGCCGCUgCGAcGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.