miRNA display CGI


Results 61 - 80 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9049 3' -61 NC_002512.2 + 133225 0.74 0.410688
Target:  5'- cCGCccagCGAGGACgggaggGCGGCGGCGCcccggucGCGGu -3'
miRNA:   3'- -GCGa---GCUCCUG------CGCCGCUGCGa------CGCC- -5'
9049 3' -61 NC_002512.2 + 65442 0.71 0.539095
Target:  5'- cCGC-CGAGGGCGCcgagcggcuucccGGCGACcugcaugGCgUGCGGg -3'
miRNA:   3'- -GCGaGCUCCUGCG-------------CCGCUG-------CG-ACGCC- -5'
9049 3' -61 NC_002512.2 + 34930 0.72 0.513541
Target:  5'- aCGacggCGGGGuCGCGGCGACGgggaGCGGa -3'
miRNA:   3'- -GCga--GCUCCuGCGCCGCUGCga--CGCC- -5'
9049 3' -61 NC_002512.2 + 33631 0.72 0.513541
Target:  5'- uCGCcgaggCGAGaGGCGCGcGCgGGCGCgGCGGa -3'
miRNA:   3'- -GCGa----GCUC-CUGCGC-CG-CUGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 60844 0.72 0.486729
Target:  5'- gCGCcCGAGGAgaUGcCGGCGcCGCUcGCGGa -3'
miRNA:   3'- -GCGaGCUCCU--GC-GCCGCuGCGA-CGCC- -5'
9049 3' -61 NC_002512.2 + 133794 0.72 0.486729
Target:  5'- gGCggCGGGGACGaCGGUcGCGCcgggUGCGGg -3'
miRNA:   3'- gCGa-GCUCCUGC-GCCGcUGCG----ACGCC- -5'
9049 3' -61 NC_002512.2 + 43069 0.72 0.485847
Target:  5'- uCGC-CGAGGcaccggucccgggGCGCGGCGA-GCaGCGGg -3'
miRNA:   3'- -GCGaGCUCC-------------UGCGCCGCUgCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 55549 0.72 0.477939
Target:  5'- gCGgaCGAGGGCGCGGCGGaccccCGcCUGCu- -3'
miRNA:   3'- -GCgaGCUCCUGCGCCGCU-----GC-GACGcc -5'
9049 3' -61 NC_002512.2 + 153946 0.72 0.472703
Target:  5'- aCGUUCGGGGACgucggguucuucgggGUccGGCGGCGCcgGCGGc -3'
miRNA:   3'- -GCGAGCUCCUG---------------CG--CCGCUGCGa-CGCC- -5'
9049 3' -61 NC_002512.2 + 22982 0.72 0.469228
Target:  5'- cCGCggCG-GGACGCgGGCGGCGCUgGUGa -3'
miRNA:   3'- -GCGa-GCuCCUGCG-CCGCUGCGA-CGCc -5'
9049 3' -61 NC_002512.2 + 97748 0.72 0.469228
Target:  5'- -cCUCGAGGugGCGGuCGucuUGCUcGCGGc -3'
miRNA:   3'- gcGAGCUCCugCGCC-GCu--GCGA-CGCC- -5'
9049 3' -61 NC_002512.2 + 29899 0.73 0.460599
Target:  5'- cCGCUCGuccccgccGGGCGCGcG-GACGCgGCGGg -3'
miRNA:   3'- -GCGAGCu-------CCUGCGC-CgCUGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 12774 0.73 0.452055
Target:  5'- cCGC-CGcAGGACuCGGCGGCGCccccgcugccccUGCGGa -3'
miRNA:   3'- -GCGaGC-UCCUGcGCCGCUGCG------------ACGCC- -5'
9049 3' -61 NC_002512.2 + 73973 0.73 0.452055
Target:  5'- aGCUgGAGGACGCGuCGGCGC--CGGa -3'
miRNA:   3'- gCGAgCUCCUGCGCcGCUGCGacGCC- -5'
9049 3' -61 NC_002512.2 + 97364 0.73 0.443597
Target:  5'- cCGCggagCGGGGAcCGCGGCGGcCGgaGaCGGg -3'
miRNA:   3'- -GCGa---GCUCCU-GCGCCGCU-GCgaC-GCC- -5'
9049 3' -61 NC_002512.2 + 20854 0.73 0.43523
Target:  5'- uCGCUCcGGGACGCGGCcgcccCGCUcaugGCGGc -3'
miRNA:   3'- -GCGAGcUCCUGCGCCGcu---GCGA----CGCC- -5'
9049 3' -61 NC_002512.2 + 118947 0.73 0.43523
Target:  5'- aGCUCGAGGggaGCGUGG-GGCGgCgGCGGg -3'
miRNA:   3'- gCGAGCUCC---UGCGCCgCUGC-GaCGCC- -5'
9049 3' -61 NC_002512.2 + 152796 0.73 0.426955
Target:  5'- cCGuCUCgGAGGucCGCGGCGACgGCggGCGGc -3'
miRNA:   3'- -GC-GAG-CUCCu-GCGCCGCUG-CGa-CGCC- -5'
9049 3' -61 NC_002512.2 + 6403 0.73 0.418774
Target:  5'- gGCa-GGGaGGCgGCGGCGGCGCUGgGGa -3'
miRNA:   3'- gCGagCUC-CUG-CGCCGCUGCGACgCC- -5'
9049 3' -61 NC_002512.2 + 54679 0.74 0.4027
Target:  5'- gCGgaCGGuGGACGCGGCGAugaaCGC-GCGGg -3'
miRNA:   3'- -GCgaGCU-CCUGCGCCGCU----GCGaCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.