Results 81 - 100 of 313 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9049 | 3' | -61 | NC_002512.2 | + | 123136 | 0.69 | 0.672782 |
Target: 5'- cCGUccCGGGGGacgggGCGGCGGCGCcGCGa -3' miRNA: 3'- -GCGa-GCUCCUg----CGCCGCUGCGaCGCc -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 100052 | 0.69 | 0.673724 |
Target: 5'- gCGCUgagaCGcGGGgGCGGCGGCGCcgacgacgagaagagGCGGa -3' miRNA: 3'- -GCGA----GCuCCUgCGCCGCUGCGa--------------CGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 75560 | 0.69 | 0.67655 |
Target: 5'- gGCUCGccGGGGCggggccgccgccgucGCGGuCGACGUgGCGGc -3' miRNA: 3'- gCGAGC--UCCUG---------------CGCC-GCUGCGaCGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 47362 | 0.69 | 0.682194 |
Target: 5'- uCGUUCacccaccGGACGCuGCGGCGC-GCGGa -3' miRNA: 3'- -GCGAGcu-----CCUGCGcCGCUGCGaCGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 83795 | 0.69 | 0.682194 |
Target: 5'- cCGC-CGAGGAcCGCgucgGGCG-CGCcgGCGGc -3' miRNA: 3'- -GCGaGCUCCU-GCG----CCGCuGCGa-CGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 4574 | 0.69 | 0.69157 |
Target: 5'- gGCgUCuGGGGCGgcggaggaGGCGGCGCcGCGGg -3' miRNA: 3'- gCG-AGcUCCUGCg-------CCGCUGCGaCGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 49134 | 0.69 | 0.695309 |
Target: 5'- aCGCcaagaUCGcGGACGCGGUacaggccuaccagauGACGCUGaGGg -3' miRNA: 3'- -GCG-----AGCuCCUGCGCCG---------------CUGCGACgCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 94710 | 0.68 | 0.700904 |
Target: 5'- aGCUCGcGGuGCGCGG-GGCGCagGCGu -3' miRNA: 3'- gCGAGCuCC-UGCGCCgCUGCGa-CGCc -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 140933 | 0.68 | 0.700904 |
Target: 5'- nGCUCG-GGA--CGGCGACGagGCGGa -3' miRNA: 3'- gCGAGCuCCUgcGCCGCUGCgaCGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 35272 | 0.68 | 0.700904 |
Target: 5'- cCGCggCGAcGGcCGCGGCGGCGgagGCGa -3' miRNA: 3'- -GCGa-GCU-CCuGCGCCGCUGCga-CGCc -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 71976 | 0.68 | 0.700904 |
Target: 5'- uCGCagUUGGGGAacaUGCGGuCGugGCaGCGGu -3' miRNA: 3'- -GCG--AGCUCCU---GCGCC-GCugCGaCGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 89747 | 0.68 | 0.700904 |
Target: 5'- uCGUgggaGAGGuuccCGCGGuCGGCGC-GCGGg -3' miRNA: 3'- -GCGag--CUCCu---GCGCC-GCUGCGaCGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 59294 | 0.68 | 0.709263 |
Target: 5'- uGCUCGAcggacucgggucgGGACaCGGCGACGgaggagaaCUGCGa -3' miRNA: 3'- gCGAGCU-------------CCUGcGCCGCUGC--------GACGCc -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 4886 | 0.68 | 0.710189 |
Target: 5'- gGCUgGAGGA-GCGGCGACGggaagaggGCGc -3' miRNA: 3'- gCGAgCUCCUgCGCCGCUGCga------CGCc -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 17035 | 0.68 | 0.710189 |
Target: 5'- aCGCUCGgagGGGACGgaCGGCGcccGCGCccaaccccgGCGGc -3' miRNA: 3'- -GCGAGC---UCCUGC--GCCGC---UGCGa--------CGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 18690 | 0.68 | 0.710189 |
Target: 5'- aGCUCGugggcggcGGGCaccccgagcaggGCGGCGACGCgcuCGGg -3' miRNA: 3'- gCGAGCu-------CCUG------------CGCCGCUGCGac-GCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 45193 | 0.68 | 0.710189 |
Target: 5'- gGuCUCGAccgGGAC-CGGCGGCGCgGaCGGc -3' miRNA: 3'- gC-GAGCU---CCUGcGCCGCUGCGaC-GCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 122036 | 0.68 | 0.710189 |
Target: 5'- gCGCUCGcGcACGCccggGGCGGCGUcgGCGGc -3' miRNA: 3'- -GCGAGCuCcUGCG----CCGCUGCGa-CGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 227658 | 0.68 | 0.710189 |
Target: 5'- cCGCaggCGAGacacgaaGCGCggcuGGCGACGCUGCGc -3' miRNA: 3'- -GCGa--GCUCc------UGCG----CCGCUGCGACGCc -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 2295 | 0.68 | 0.719416 |
Target: 5'- cCGCUgCGGGuGGCGgGGCucUGCUGCGc -3' miRNA: 3'- -GCGA-GCUC-CUGCgCCGcuGCGACGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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