miRNA display CGI


Results 81 - 100 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9049 3' -61 NC_002512.2 + 123136 0.69 0.672782
Target:  5'- cCGUccCGGGGGacgggGCGGCGGCGCcGCGa -3'
miRNA:   3'- -GCGa-GCUCCUg----CGCCGCUGCGaCGCc -5'
9049 3' -61 NC_002512.2 + 100052 0.69 0.673724
Target:  5'- gCGCUgagaCGcGGGgGCGGCGGCGCcgacgacgagaagagGCGGa -3'
miRNA:   3'- -GCGA----GCuCCUgCGCCGCUGCGa--------------CGCC- -5'
9049 3' -61 NC_002512.2 + 75560 0.69 0.67655
Target:  5'- gGCUCGccGGGGCggggccgccgccgucGCGGuCGACGUgGCGGc -3'
miRNA:   3'- gCGAGC--UCCUG---------------CGCC-GCUGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 47362 0.69 0.682194
Target:  5'- uCGUUCacccaccGGACGCuGCGGCGC-GCGGa -3'
miRNA:   3'- -GCGAGcu-----CCUGCGcCGCUGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 83795 0.69 0.682194
Target:  5'- cCGC-CGAGGAcCGCgucgGGCG-CGCcgGCGGc -3'
miRNA:   3'- -GCGaGCUCCU-GCG----CCGCuGCGa-CGCC- -5'
9049 3' -61 NC_002512.2 + 4574 0.69 0.69157
Target:  5'- gGCgUCuGGGGCGgcggaggaGGCGGCGCcGCGGg -3'
miRNA:   3'- gCG-AGcUCCUGCg-------CCGCUGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 49134 0.69 0.695309
Target:  5'- aCGCcaagaUCGcGGACGCGGUacaggccuaccagauGACGCUGaGGg -3'
miRNA:   3'- -GCG-----AGCuCCUGCGCCG---------------CUGCGACgCC- -5'
9049 3' -61 NC_002512.2 + 94710 0.68 0.700904
Target:  5'- aGCUCGcGGuGCGCGG-GGCGCagGCGu -3'
miRNA:   3'- gCGAGCuCC-UGCGCCgCUGCGa-CGCc -5'
9049 3' -61 NC_002512.2 + 140933 0.68 0.700904
Target:  5'- nGCUCG-GGA--CGGCGACGagGCGGa -3'
miRNA:   3'- gCGAGCuCCUgcGCCGCUGCgaCGCC- -5'
9049 3' -61 NC_002512.2 + 35272 0.68 0.700904
Target:  5'- cCGCggCGAcGGcCGCGGCGGCGgagGCGa -3'
miRNA:   3'- -GCGa-GCU-CCuGCGCCGCUGCga-CGCc -5'
9049 3' -61 NC_002512.2 + 71976 0.68 0.700904
Target:  5'- uCGCagUUGGGGAacaUGCGGuCGugGCaGCGGu -3'
miRNA:   3'- -GCG--AGCUCCU---GCGCC-GCugCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 89747 0.68 0.700904
Target:  5'- uCGUgggaGAGGuuccCGCGGuCGGCGC-GCGGg -3'
miRNA:   3'- -GCGag--CUCCu---GCGCC-GCUGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 59294 0.68 0.709263
Target:  5'- uGCUCGAcggacucgggucgGGACaCGGCGACGgaggagaaCUGCGa -3'
miRNA:   3'- gCGAGCU-------------CCUGcGCCGCUGC--------GACGCc -5'
9049 3' -61 NC_002512.2 + 4886 0.68 0.710189
Target:  5'- gGCUgGAGGA-GCGGCGACGggaagaggGCGc -3'
miRNA:   3'- gCGAgCUCCUgCGCCGCUGCga------CGCc -5'
9049 3' -61 NC_002512.2 + 17035 0.68 0.710189
Target:  5'- aCGCUCGgagGGGACGgaCGGCGcccGCGCccaaccccgGCGGc -3'
miRNA:   3'- -GCGAGC---UCCUGC--GCCGC---UGCGa--------CGCC- -5'
9049 3' -61 NC_002512.2 + 18690 0.68 0.710189
Target:  5'- aGCUCGugggcggcGGGCaccccgagcaggGCGGCGACGCgcuCGGg -3'
miRNA:   3'- gCGAGCu-------CCUG------------CGCCGCUGCGac-GCC- -5'
9049 3' -61 NC_002512.2 + 45193 0.68 0.710189
Target:  5'- gGuCUCGAccgGGAC-CGGCGGCGCgGaCGGc -3'
miRNA:   3'- gC-GAGCU---CCUGcGCCGCUGCGaC-GCC- -5'
9049 3' -61 NC_002512.2 + 122036 0.68 0.710189
Target:  5'- gCGCUCGcGcACGCccggGGCGGCGUcgGCGGc -3'
miRNA:   3'- -GCGAGCuCcUGCG----CCGCUGCGa-CGCC- -5'
9049 3' -61 NC_002512.2 + 227658 0.68 0.710189
Target:  5'- cCGCaggCGAGacacgaaGCGCggcuGGCGACGCUGCGc -3'
miRNA:   3'- -GCGa--GCUCc------UGCG----CCGCUGCGACGCc -5'
9049 3' -61 NC_002512.2 + 2295 0.68 0.719416
Target:  5'- cCGCUgCGGGuGGCGgGGCucUGCUGCGc -3'
miRNA:   3'- -GCGA-GCUC-CUGCgCCGcuGCGACGCc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.