miRNA display CGI


Results 81 - 100 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9049 3' -61 NC_002512.2 + 134514 0.68 0.746683
Target:  5'- aCGCcgaCGucGACGuCGGCGuccCGCUGUGGc -3'
miRNA:   3'- -GCGa--GCucCUGC-GCCGCu--GCGACGCC- -5'
9049 3' -61 NC_002512.2 + 154708 0.67 0.755609
Target:  5'- gGCgUCGAGcGGCGCGacggaaCGGCGUUGCGu -3'
miRNA:   3'- gCG-AGCUC-CUGCGCc-----GCUGCGACGCc -5'
9049 3' -61 NC_002512.2 + 102283 0.67 0.764442
Target:  5'- gGCUCG-GcGCGCgucgaccgccagGGCGACGUcGCGGa -3'
miRNA:   3'- gCGAGCuCcUGCG------------CCGCUGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 207924 0.67 0.790304
Target:  5'- aGCUCGAacGGGCcCGGUGGUGCU-CGGg -3'
miRNA:   3'- gCGAGCU--CCUGcGCCGCUGCGAcGCC- -5'
9049 3' -61 NC_002512.2 + 193732 0.68 0.73767
Target:  5'- uGCUCGAGuuCGUgGGCGAaCGCggccucGCGGu -3'
miRNA:   3'- gCGAGCUCcuGCG-CCGCU-GCGa-----CGCC- -5'
9049 3' -61 NC_002512.2 + 229541 0.68 0.73767
Target:  5'- aCGC-CGGGGAgccggGCGG-GGCGCcgGCGGa -3'
miRNA:   3'- -GCGaGCUCCUg----CGCCgCUGCGa-CGCC- -5'
9049 3' -61 NC_002512.2 + 137535 0.68 0.746683
Target:  5'- uGCUCGcGucCGCGGCGACGgguucggucGCGGa -3'
miRNA:   3'- gCGAGCuCcuGCGCCGCUGCga-------CGCC- -5'
9049 3' -61 NC_002512.2 + 138 0.68 0.73767
Target:  5'- aCGC-CGGGGAgccggGCGG-GGCGCcgGCGGa -3'
miRNA:   3'- -GCGaGCUCCUg----CGCCgCUGCGa-CGCC- -5'
9049 3' -61 NC_002512.2 + 123856 0.68 0.728579
Target:  5'- gGCggaGAGGACGCcgcacccccGGCGGCGCcGCc- -3'
miRNA:   3'- gCGag-CUCCUGCG---------CCGCUGCGaCGcc -5'
9049 3' -61 NC_002512.2 + 87700 0.68 0.728579
Target:  5'- aCGCgCGGcGACGCGGaGACGCcGCGa -3'
miRNA:   3'- -GCGaGCUcCUGCGCCgCUGCGaCGCc -5'
9049 3' -61 NC_002512.2 + 188918 0.68 0.73767
Target:  5'- gCGgUCGGagagucccGGugGCGG-GGCGCgGCGGu -3'
miRNA:   3'- -GCgAGCU--------CCugCGCCgCUGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 170774 0.68 0.746683
Target:  5'- aGCgCGAcGGGCGCGaucggcGCGACGacgGCGGc -3'
miRNA:   3'- gCGaGCU-CCUGCGC------CGCUGCga-CGCC- -5'
9049 3' -61 NC_002512.2 + 131396 0.67 0.790304
Target:  5'- aGCagGAGGAgGcCGGgGAagaGCUGCGa -3'
miRNA:   3'- gCGagCUCCUgC-GCCgCUg--CGACGCc -5'
9049 3' -61 NC_002512.2 + 128606 0.66 0.845312
Target:  5'- gGCUCGAGGAacugaagaucaucCGCcuGGCcugucuccuGACGCUGggcCGGg -3'
miRNA:   3'- gCGAGCUCCU-------------GCG--CCG---------CUGCGAC---GCC- -5'
9049 3' -61 NC_002512.2 + 227659 0.68 0.719416
Target:  5'- gGgUCcgGAGGAagaGCGGCGGCGCcGcCGGc -3'
miRNA:   3'- gCgAG--CUCCUg--CGCCGCUGCGaC-GCC- -5'
9049 3' -61 NC_002512.2 + 156486 0.68 0.710189
Target:  5'- gGCUCGGcgggcugggcGGACaCGGCGGCcuggGCgGCGGg -3'
miRNA:   3'- gCGAGCU----------CCUGcGCCGCUG----CGaCGCC- -5'
9049 3' -61 NC_002512.2 + 194996 0.68 0.710189
Target:  5'- gCGCaaGAGGGCGaCGGCGGucccgGCgGCGGc -3'
miRNA:   3'- -GCGagCUCCUGC-GCCGCUg----CGaCGCC- -5'
9049 3' -61 NC_002512.2 + 103686 0.68 0.719416
Target:  5'- uCGCa-GAGG--GCGGCgGACGCgGCGGg -3'
miRNA:   3'- -GCGagCUCCugCGCCG-CUGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 219686 0.68 0.719416
Target:  5'- cCGCcCGAGGACGaggaggagcguCGGCGcucgggGCGCgagagGCGGc -3'
miRNA:   3'- -GCGaGCUCCUGC-----------GCCGC------UGCGa----CGCC- -5'
9049 3' -61 NC_002512.2 + 213639 0.68 0.725837
Target:  5'- cCGC-CGcGGGCGaCGGCGACGacgacgaugacggagGCGGa -3'
miRNA:   3'- -GCGaGCuCCUGC-GCCGCUGCga-------------CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.