miRNA display CGI


Results 41 - 60 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9049 3' -61 NC_002512.2 + 150036 0.66 0.823043
Target:  5'- aGgaCGAGGGgGcCGGgGACGaCgggGCGGg -3'
miRNA:   3'- gCgaGCUCCUgC-GCCgCUGC-Ga--CGCC- -5'
9049 3' -61 NC_002512.2 + 192579 0.66 0.815066
Target:  5'- gGcCUCGGagcGGACcgucccgcugcuGCGGCGcGCGCgGCGGg -3'
miRNA:   3'- gC-GAGCU---CCUG------------CGCCGC-UGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 169013 0.66 0.838544
Target:  5'- gGCUCGGcgauccGGGCG-GGCGucCGCgaGCGGc -3'
miRNA:   3'- gCGAGCU------CCUGCgCCGCu-GCGa-CGCC- -5'
9049 3' -61 NC_002512.2 + 74638 0.66 0.830871
Target:  5'- aGC-CGucGACGCcGCGACGg-GCGGg -3'
miRNA:   3'- gCGaGCucCUGCGcCGCUGCgaCGCC- -5'
9049 3' -61 NC_002512.2 + 133584 0.66 0.815066
Target:  5'- cCGC-CGGGGACccgaGCGGgcCGGCcucCUGCGGa -3'
miRNA:   3'- -GCGaGCUCCUG----CGCC--GCUGc--GACGCC- -5'
9049 3' -61 NC_002512.2 + 31811 0.66 0.806946
Target:  5'- aCGC-CG-GGGCGCGGUcgagggGACGC-GCGa -3'
miRNA:   3'- -GCGaGCuCCUGCGCCG------CUGCGaCGCc -5'
9049 3' -61 NC_002512.2 + 113739 0.66 0.815066
Target:  5'- gGCUCGGGGAUGuuGCcGAccacgauaCGCgGCGGc -3'
miRNA:   3'- gCGAGCUCCUGCgcCG-CU--------GCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 82686 0.66 0.815066
Target:  5'- cCGCUCG-GGcUGuCGGCGuccguGCGCggcGCGGg -3'
miRNA:   3'- -GCGAGCuCCuGC-GCCGC-----UGCGa--CGCC- -5'
9049 3' -61 NC_002512.2 + 136193 0.66 0.806946
Target:  5'- uCGC-CG-GGAuCGCGuCGACGCcgGCGGc -3'
miRNA:   3'- -GCGaGCuCCU-GCGCcGCUGCGa-CGCC- -5'
9049 3' -61 NC_002512.2 + 158287 0.66 0.822252
Target:  5'- aGCUgGAGGGCGUGcCGGCccccaagGCcGCGGu -3'
miRNA:   3'- gCGAgCUCCUGCGCcGCUG-------CGaCGCC- -5'
9049 3' -61 NC_002512.2 + 108595 0.66 0.806946
Target:  5'- gGCccCGGGGA-GCGGCGGC-C-GCGGg -3'
miRNA:   3'- gCGa-GCUCCUgCGCCGCUGcGaCGCC- -5'
9049 3' -61 NC_002512.2 + 28251 0.66 0.806946
Target:  5'- uCGCgccgCGAGuACGaCGGCGccuaccgcucgGCGCUGgCGGa -3'
miRNA:   3'- -GCGa---GCUCcUGC-GCCGC-----------UGCGAC-GCC- -5'
9049 3' -61 NC_002512.2 + 125604 0.66 0.823043
Target:  5'- cCGC-CGccGGACGCGaGaaaGACGCcgGCGGc -3'
miRNA:   3'- -GCGaGCu-CCUGCGC-Cg--CUGCGa-CGCC- -5'
9049 3' -61 NC_002512.2 + 134302 0.67 0.781797
Target:  5'- uCGUcuUCGAGGACGUcgccggGGcCGGCGCcGaCGGa -3'
miRNA:   3'- -GCG--AGCUCCUGCG------CC-GCUGCGaC-GCC- -5'
9049 3' -61 NC_002512.2 + 135385 0.67 0.781797
Target:  5'- gGUUCGAaGACGCGccCGACGaCUGCGu -3'
miRNA:   3'- gCGAGCUcCUGCGCc-GCUGC-GACGCc -5'
9049 3' -61 NC_002512.2 + 154657 0.67 0.781797
Target:  5'- gCGCUCGucaccGCGaCGGCGuuaACGCgGCGGa -3'
miRNA:   3'- -GCGAGCucc--UGC-GCCGC---UGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 58197 0.67 0.781797
Target:  5'- aCGCUgGugaguGGGCGCGGCGcgcaccccGCGC-GCGu -3'
miRNA:   3'- -GCGAgCu----CCUGCGCCGC--------UGCGaCGCc -5'
9049 3' -61 NC_002512.2 + 79325 0.67 0.786915
Target:  5'- cCGCUCcuccuccccucccAGGuCGCGGCGGCGUacccucGCGGc -3'
miRNA:   3'- -GCGAGc------------UCCuGCGCCGCUGCGa-----CGCC- -5'
9049 3' -61 NC_002512.2 + 17981 0.67 0.773173
Target:  5'- aCGCUCGAcGACGCGGCa--GCccCGGa -3'
miRNA:   3'- -GCGAGCUcCUGCGCCGcugCGacGCC- -5'
9049 3' -61 NC_002512.2 + 86122 0.67 0.773173
Target:  5'- gCGCggagGAGGuCGCGGaccuggaagcCGACGCcGCGGc -3'
miRNA:   3'- -GCGag--CUCCuGCGCC----------GCUGCGaCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.