miRNA display CGI


Results 1 - 20 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9049 3' -61 NC_002512.2 + 145551 1.09 0.002012
Target:  5'- cCGCUCGAGGACGCGGCGACGCUGCGGc -3'
miRNA:   3'- -GCGAGCUCCUGCGCCGCUGCGACGCC- -5'
9049 3' -61 NC_002512.2 + 155370 0.86 0.068295
Target:  5'- gCGCUCGAGGucgGgGCGGCGGCGCcgGCGGg -3'
miRNA:   3'- -GCGAGCUCC---UgCGCCGCUGCGa-CGCC- -5'
9049 3' -61 NC_002512.2 + 101643 0.81 0.152684
Target:  5'- cCGCUCGAGGggaGCGCGGCGGC-C-GCGGa -3'
miRNA:   3'- -GCGAGCUCC---UGCGCCGCUGcGaCGCC- -5'
9049 3' -61 NC_002512.2 + 137245 0.8 0.184249
Target:  5'- ---aCGAGGACaccgGCGGCGAgCGCUGCGGg -3'
miRNA:   3'- gcgaGCUCCUG----CGCCGCU-GCGACGCC- -5'
9049 3' -61 NC_002512.2 + 109846 0.8 0.188577
Target:  5'- gGCgUCGGGGAC-CGGCGugGCgGCGGu -3'
miRNA:   3'- gCG-AGCUCCUGcGCCGCugCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 14635 0.79 0.206796
Target:  5'- gCGCUUGAGGAagGCGGCGuaGCUGUGGg -3'
miRNA:   3'- -GCGAGCUCCUg-CGCCGCugCGACGCC- -5'
9049 3' -61 NC_002512.2 + 121888 0.78 0.221441
Target:  5'- uCGCg-GGGGACGCucGGCGACGC-GCGGg -3'
miRNA:   3'- -GCGagCUCCUGCG--CCGCUGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 124314 0.78 0.231689
Target:  5'- aGCugaUCGGGGcCGCGGCGGacgUGCUGCGGc -3'
miRNA:   3'- gCG---AGCUCCuGCGCCGCU---GCGACGCC- -5'
9049 3' -61 NC_002512.2 + 226768 0.78 0.231689
Target:  5'- aCGCggagggCGAGGACGUcucgGGCGACGCcGUGGu -3'
miRNA:   3'- -GCGa-----GCUCCUGCG----CCGCUGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 108999 0.78 0.242333
Target:  5'- uGCUCGucGGCGcCGGCGGCGUcguccUGCGGa -3'
miRNA:   3'- gCGAGCucCUGC-GCCGCUGCG-----ACGCC- -5'
9049 3' -61 NC_002512.2 + 118025 0.78 0.247806
Target:  5'- cCGUacgaCGAGGACGCGGCGACG--GCGGc -3'
miRNA:   3'- -GCGa---GCUCCUGCGCCGCUGCgaCGCC- -5'
9049 3' -61 NC_002512.2 + 5894 0.77 0.259059
Target:  5'- uCGCUCGuGGACgGCGG-GGCGC-GCGGg -3'
miRNA:   3'- -GCGAGCuCCUG-CGCCgCUGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 43600 0.77 0.264841
Target:  5'- uCGCggaCGAGGACGCGGag--GCUGCGGa -3'
miRNA:   3'- -GCGa--GCUCCUGCGCCgcugCGACGCC- -5'
9049 3' -61 NC_002512.2 + 166467 0.77 0.264841
Target:  5'- gGCUCGAGGGCGgGGaCGGCGggaccGCGGg -3'
miRNA:   3'- gCGAGCUCCUGCgCC-GCUGCga---CGCC- -5'
9049 3' -61 NC_002512.2 + 116459 0.77 0.276716
Target:  5'- aGCUCGGGGACGgGGCGGUGaucccgGCGGc -3'
miRNA:   3'- gCGAGCUCCUGCgCCGCUGCga----CGCC- -5'
9049 3' -61 NC_002512.2 + 108417 0.77 0.276716
Target:  5'- aGgaCGGGGACgGCGGCgGGCGCgggGCGGa -3'
miRNA:   3'- gCgaGCUCCUG-CGCCG-CUGCGa--CGCC- -5'
9049 3' -61 NC_002512.2 + 129093 0.76 0.289014
Target:  5'- ---cCGAGGACG-GGCGGCGuCUGCGGc -3'
miRNA:   3'- gcgaGCUCCUGCgCCGCUGC-GACGCC- -5'
9049 3' -61 NC_002512.2 + 131026 0.76 0.289014
Target:  5'- gCGCUCGAGGGCGuCGGgGcCGCgGgGGa -3'
miRNA:   3'- -GCGAGCUCCUGC-GCCgCuGCGaCgCC- -5'
9049 3' -61 NC_002512.2 + 188631 0.76 0.294686
Target:  5'- gCGCUCGggccgcaAGGGCGcCGGCGGCgGCgGCGGc -3'
miRNA:   3'- -GCGAGC-------UCCUGC-GCCGCUG-CGaCGCC- -5'
9049 3' -61 NC_002512.2 + 126762 0.76 0.295321
Target:  5'- aCGcCUCG-GGGCGCGGCGGCgGCgGCGa -3'
miRNA:   3'- -GC-GAGCuCCUGCGCCGCUG-CGaCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.