miRNA display CGI


Results 1 - 20 of 313 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9049 3' -61 NC_002512.2 + 138 0.68 0.73767
Target:  5'- aCGC-CGGGGAgccggGCGG-GGCGCcgGCGGa -3'
miRNA:   3'- -GCGaGCUCCUg----CGCCgCUGCGa-CGCC- -5'
9049 3' -61 NC_002512.2 + 2295 0.68 0.719416
Target:  5'- cCGCUgCGGGuGGCGgGGCucUGCUGCGc -3'
miRNA:   3'- -GCGA-GCUC-CUGCgCCGcuGCGACGCc -5'
9049 3' -61 NC_002512.2 + 2824 0.71 0.568807
Target:  5'- gCGCgggcgCGGgcccGGACGaCGGCGGgcaGCUGCGGc -3'
miRNA:   3'- -GCGa----GCU----CCUGC-GCCGCUg--CGACGCC- -5'
9049 3' -61 NC_002512.2 + 3052 0.74 0.371002
Target:  5'- cCGcCUUGAcggcggcGGACGCGGCGGCgGCgGCGGc -3'
miRNA:   3'- -GC-GAGCU-------CCUGCGCCGCUG-CGaCGCC- -5'
9049 3' -61 NC_002512.2 + 4574 0.69 0.69157
Target:  5'- gGCgUCuGGGGCGgcggaggaGGCGGCGCcGCGGg -3'
miRNA:   3'- gCG-AGcUCCUGCg-------CCGCUGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 4841 0.69 0.671839
Target:  5'- cCGC-CGAGGAgCGCGGCcauCGCgggguucgccgcgUGCGGc -3'
miRNA:   3'- -GCGaGCUCCU-GCGCCGcu-GCG-------------ACGCC- -5'
9049 3' -61 NC_002512.2 + 4886 0.68 0.710189
Target:  5'- gGCUgGAGGA-GCGGCGACGggaagaggGCGc -3'
miRNA:   3'- gCGAgCUCCUgCGCCGCUGCga------CGCc -5'
9049 3' -61 NC_002512.2 + 5256 0.67 0.788612
Target:  5'- gGC-CGAGGcCGCGGCGGCGaccccgagccCGGu -3'
miRNA:   3'- gCGaGCUCCuGCGCCGCUGCgac-------GCC- -5'
9049 3' -61 NC_002512.2 + 5894 0.77 0.259059
Target:  5'- uCGCUCGuGGACgGCGG-GGCGC-GCGGg -3'
miRNA:   3'- -GCGAGCuCCUG-CGCCgCUGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 6403 0.73 0.418774
Target:  5'- gGCa-GGGaGGCgGCGGCGGCGCUGgGGa -3'
miRNA:   3'- gCGagCUC-CUG-CGCCGCUGCGACgCC- -5'
9049 3' -61 NC_002512.2 + 7453 0.66 0.815066
Target:  5'- gGCcCGGGGGaagcCGCGGCG-CgGCUGcCGGc -3'
miRNA:   3'- gCGaGCUCCU----GCGCCGCuG-CGAC-GCC- -5'
9049 3' -61 NC_002512.2 + 8371 0.71 0.568807
Target:  5'- gCGC-CGAGGAucCGCGGCGcCGC-GCaGGa -3'
miRNA:   3'- -GCGaGCUCCU--GCGCCGCuGCGaCG-CC- -5'
9049 3' -61 NC_002512.2 + 9369 0.66 0.838544
Target:  5'- aGCUccuccagguccCGGGcGACGCaGGCcacggccuCGCUGCGGg -3'
miRNA:   3'- gCGA-----------GCUC-CUGCG-CCGcu------GCGACGCC- -5'
9049 3' -61 NC_002512.2 + 10471 0.66 0.806946
Target:  5'- cCGC-CGccccGGGCGUgGGCGuCGCgGCGGg -3'
miRNA:   3'- -GCGaGCu---CCUGCG-CCGCuGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 10576 0.69 0.672782
Target:  5'- aCGCUCuccccguGGcCGCGGaCGACGaaGCGGg -3'
miRNA:   3'- -GCGAGcu-----CCuGCGCC-GCUGCgaCGCC- -5'
9049 3' -61 NC_002512.2 + 11413 0.75 0.363533
Target:  5'- cCGCgggaCGAGGAgaugaccgcggucCGCGGgGACGCcGCGGa -3'
miRNA:   3'- -GCGa---GCUCCU-------------GCGCCgCUGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 11996 0.7 0.634917
Target:  5'- cCGCUCGAcGACGCGGCcgccgaucucgGACGC-GCu- -3'
miRNA:   3'- -GCGAGCUcCUGCGCCG-----------CUGCGaCGcc -5'
9049 3' -61 NC_002512.2 + 12390 0.69 0.653879
Target:  5'- uCGCcuUCGGGcGGCgGCGGCGGCGC--CGGg -3'
miRNA:   3'- -GCG--AGCUC-CUG-CGCCGCUGCGacGCC- -5'
9049 3' -61 NC_002512.2 + 12774 0.73 0.452055
Target:  5'- cCGC-CGcAGGACuCGGCGGCGCccccgcugccccUGCGGa -3'
miRNA:   3'- -GCGaGC-UCCUGcGCCGCUGCG------------ACGCC- -5'
9049 3' -61 NC_002512.2 + 13674 0.71 0.568807
Target:  5'- aGCUCccGGACGaGGCGACGgCcGCGGc -3'
miRNA:   3'- gCGAGcuCCUGCgCCGCUGC-GaCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.