Results 1 - 20 of 313 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9049 | 3' | -61 | NC_002512.2 | + | 229541 | 0.68 | 0.73767 |
Target: 5'- aCGC-CGGGGAgccggGCGG-GGCGCcgGCGGa -3' miRNA: 3'- -GCGaGCUCCUg----CGCCgCUGCGa-CGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 228245 | 0.66 | 0.830871 |
Target: 5'- gGCgaaCGugccGGACGCGGgGGCGaCUgaccGCGGa -3' miRNA: 3'- gCGa--GCu---CCUGCGCCgCUGC-GA----CGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 227659 | 0.68 | 0.719416 |
Target: 5'- gGgUCcgGAGGAagaGCGGCGGCGCcGcCGGc -3' miRNA: 3'- gCgAG--CUCCUg--CGCCGCUGCGaC-GCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 227658 | 0.68 | 0.710189 |
Target: 5'- cCGCaggCGAGacacgaaGCGCggcuGGCGACGCUGCGc -3' miRNA: 3'- -GCGa--GCUCc------UGCG----CCGCUGCGACGCc -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 227228 | 0.7 | 0.597019 |
Target: 5'- gGCggacCGGGaGGCGCGGCGgACGg-GCGGg -3' miRNA: 3'- gCGa---GCUC-CUGCGCCGC-UGCgaCGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 227185 | 0.7 | 0.596074 |
Target: 5'- aGC-CGGGGGaGCGGCaGGCGCUcccgcgcGCGGa -3' miRNA: 3'- gCGaGCUCCUgCGCCG-CUGCGA-------CGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 226768 | 0.78 | 0.231689 |
Target: 5'- aCGCggagggCGAGGACGUcucgGGCGACGCcGUGGu -3' miRNA: 3'- -GCGa-----GCUCCUGCG----CCGCUGCGaCGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 226717 | 0.69 | 0.69157 |
Target: 5'- aGCgacggGAGGcCGCgGGCGACGacgGCGGg -3' miRNA: 3'- gCGag---CUCCuGCG-CCGCUGCga-CGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 224157 | 0.69 | 0.663342 |
Target: 5'- aCGCgUGAGGcgGgGCGGgGGCGC-GCGGa -3' miRNA: 3'- -GCGaGCUCC--UgCGCCgCUGCGaCGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 223794 | 0.73 | 0.418774 |
Target: 5'- uCGC-CGGGGACGuCGGCGGCGaCcGcCGGg -3' miRNA: 3'- -GCGaGCUCCUGC-GCCGCUGC-GaC-GCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 222304 | 0.66 | 0.806946 |
Target: 5'- cCGCUgcCGccGGAgGCGGUaccgGAgGCUGCGGc -3' miRNA: 3'- -GCGA--GCu-CCUgCGCCG----CUgCGACGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 221663 | 0.74 | 0.394812 |
Target: 5'- aCGCUCGAggccuacgucugGGACGCggacacccgcccGGCGACGCU-CGGc -3' miRNA: 3'- -GCGAGCU------------CCUGCG------------CCGCUGCGAcGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 221400 | 0.73 | 0.42449 |
Target: 5'- gCGCgggCGGGGAgGCGGCGGgucuguccgacggcCGCcaUGCGGa -3' miRNA: 3'- -GCGa--GCUCCUgCGCCGCU--------------GCG--ACGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 221266 | 0.68 | 0.73767 |
Target: 5'- aGUcgGGGGACGCGG-GGCGC-GUGGa -3' miRNA: 3'- gCGagCUCCUGCGCCgCUGCGaCGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 221235 | 0.68 | 0.73767 |
Target: 5'- gGCUUGAGGuCGauCGGcCGGcCGCgGCGGa -3' miRNA: 3'- gCGAGCUCCuGC--GCC-GCU-GCGaCGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 219793 | 0.66 | 0.830871 |
Target: 5'- gGC-CGGGGACacagauaGGgGACGC-GCGGg -3' miRNA: 3'- gCGaGCUCCUGcg-----CCgCUGCGaCGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 219686 | 0.68 | 0.719416 |
Target: 5'- cCGCcCGAGGACGaggaggagcguCGGCGcucgggGCGCgagagGCGGc -3' miRNA: 3'- -GCGaGCUCCUGC-----------GCCGC------UGCGa----CGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 219564 | 0.69 | 0.682194 |
Target: 5'- uCGC-CGGGGACGUGuGCGACgGCUccuacguccugGUGGc -3' miRNA: 3'- -GCGaGCUCCUGCGC-CGCUG-CGA-----------CGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 219265 | 0.67 | 0.781797 |
Target: 5'- uGCUCGuccggcAGGGgGCGGacgcCGACGCcGUGGc -3' miRNA: 3'- gCGAGC------UCCUgCGCC----GCUGCGaCGCC- -5' |
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9049 | 3' | -61 | NC_002512.2 | + | 218215 | 0.68 | 0.728579 |
Target: 5'- cCGcCUCG-GGcCGCGGCGG-GCcGCGGc -3' miRNA: 3'- -GC-GAGCuCCuGCGCCGCUgCGaCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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