miRNA display CGI


Results 1 - 20 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9049 3' -61 NC_002512.2 + 229541 0.68 0.73767
Target:  5'- aCGC-CGGGGAgccggGCGG-GGCGCcgGCGGa -3'
miRNA:   3'- -GCGaGCUCCUg----CGCCgCUGCGa-CGCC- -5'
9049 3' -61 NC_002512.2 + 228245 0.66 0.830871
Target:  5'- gGCgaaCGugccGGACGCGGgGGCGaCUgaccGCGGa -3'
miRNA:   3'- gCGa--GCu---CCUGCGCCgCUGC-GA----CGCC- -5'
9049 3' -61 NC_002512.2 + 227659 0.68 0.719416
Target:  5'- gGgUCcgGAGGAagaGCGGCGGCGCcGcCGGc -3'
miRNA:   3'- gCgAG--CUCCUg--CGCCGCUGCGaC-GCC- -5'
9049 3' -61 NC_002512.2 + 227658 0.68 0.710189
Target:  5'- cCGCaggCGAGacacgaaGCGCggcuGGCGACGCUGCGc -3'
miRNA:   3'- -GCGa--GCUCc------UGCG----CCGCUGCGACGCc -5'
9049 3' -61 NC_002512.2 + 227228 0.7 0.597019
Target:  5'- gGCggacCGGGaGGCGCGGCGgACGg-GCGGg -3'
miRNA:   3'- gCGa---GCUC-CUGCGCCGC-UGCgaCGCC- -5'
9049 3' -61 NC_002512.2 + 227185 0.7 0.596074
Target:  5'- aGC-CGGGGGaGCGGCaGGCGCUcccgcgcGCGGa -3'
miRNA:   3'- gCGaGCUCCUgCGCCG-CUGCGA-------CGCC- -5'
9049 3' -61 NC_002512.2 + 226768 0.78 0.231689
Target:  5'- aCGCggagggCGAGGACGUcucgGGCGACGCcGUGGu -3'
miRNA:   3'- -GCGa-----GCUCCUGCG----CCGCUGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 226717 0.69 0.69157
Target:  5'- aGCgacggGAGGcCGCgGGCGACGacgGCGGg -3'
miRNA:   3'- gCGag---CUCCuGCG-CCGCUGCga-CGCC- -5'
9049 3' -61 NC_002512.2 + 224157 0.69 0.663342
Target:  5'- aCGCgUGAGGcgGgGCGGgGGCGC-GCGGa -3'
miRNA:   3'- -GCGaGCUCC--UgCGCCgCUGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 223794 0.73 0.418774
Target:  5'- uCGC-CGGGGACGuCGGCGGCGaCcGcCGGg -3'
miRNA:   3'- -GCGaGCUCCUGC-GCCGCUGC-GaC-GCC- -5'
9049 3' -61 NC_002512.2 + 222304 0.66 0.806946
Target:  5'- cCGCUgcCGccGGAgGCGGUaccgGAgGCUGCGGc -3'
miRNA:   3'- -GCGA--GCu-CCUgCGCCG----CUgCGACGCC- -5'
9049 3' -61 NC_002512.2 + 221663 0.74 0.394812
Target:  5'- aCGCUCGAggccuacgucugGGACGCggacacccgcccGGCGACGCU-CGGc -3'
miRNA:   3'- -GCGAGCU------------CCUGCG------------CCGCUGCGAcGCC- -5'
9049 3' -61 NC_002512.2 + 221400 0.73 0.42449
Target:  5'- gCGCgggCGGGGAgGCGGCGGgucuguccgacggcCGCcaUGCGGa -3'
miRNA:   3'- -GCGa--GCUCCUgCGCCGCU--------------GCG--ACGCC- -5'
9049 3' -61 NC_002512.2 + 221266 0.68 0.73767
Target:  5'- aGUcgGGGGACGCGG-GGCGC-GUGGa -3'
miRNA:   3'- gCGagCUCCUGCGCCgCUGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 221235 0.68 0.73767
Target:  5'- gGCUUGAGGuCGauCGGcCGGcCGCgGCGGa -3'
miRNA:   3'- gCGAGCUCCuGC--GCC-GCU-GCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 219793 0.66 0.830871
Target:  5'- gGC-CGGGGACacagauaGGgGACGC-GCGGg -3'
miRNA:   3'- gCGaGCUCCUGcg-----CCgCUGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 219686 0.68 0.719416
Target:  5'- cCGCcCGAGGACGaggaggagcguCGGCGcucgggGCGCgagagGCGGc -3'
miRNA:   3'- -GCGaGCUCCUGC-----------GCCGC------UGCGa----CGCC- -5'
9049 3' -61 NC_002512.2 + 219564 0.69 0.682194
Target:  5'- uCGC-CGGGGACGUGuGCGACgGCUccuacguccugGUGGc -3'
miRNA:   3'- -GCGaGCUCCUGCGC-CGCUG-CGA-----------CGCC- -5'
9049 3' -61 NC_002512.2 + 219265 0.67 0.781797
Target:  5'- uGCUCGuccggcAGGGgGCGGacgcCGACGCcGUGGc -3'
miRNA:   3'- gCGAGC------UCCUgCGCC----GCUGCGaCGCC- -5'
9049 3' -61 NC_002512.2 + 218215 0.68 0.728579
Target:  5'- cCGcCUCG-GGcCGCGGCGG-GCcGCGGc -3'
miRNA:   3'- -GC-GAGCuCCuGCGCCGCUgCGaCGCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.